diff options
| author | Frederick Muriuki Muriithi | 2022-02-21 17:55:08 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-02-21 17:55:08 +0300 |
| commit | 393700a432e25336c5afd1f008152202853f5bc2 (patch) | |
| tree | 745e946f9441d33cfb4461e0dfc62c82baa40cc9 /tests | |
| parent | a35fce27875d9db80dce1976b6f8ee8c00ecfe0a (diff) | |
| download | genenetwork3-393700a432e25336c5afd1f008152202853f5bc2.tar.gz | |
Fix minor issues introduced while fixing linting errors
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/unit/db/test_traits.py | 36 |
1 files changed, 18 insertions, 18 deletions
diff --git a/tests/unit/db/test_traits.py b/tests/unit/db/test_traits.py index d7c0b27..de65348 100644 --- a/tests/unit/db/test_traits.py +++ b/tests/unit/db/test_traits.py @@ -137,11 +137,10 @@ class TestTraitsDBFunctions(TestCase): "SELECT " "Geno.name, Geno.chr, Geno.mb, Geno.source2, Geno.sequence " "FROM " - "Geno, GenoFreeze, GenoXRef " + "Geno INNER JOIN GenoXRef ON GenoXRef.GenoId = Geno.Id " + "INNER JOIN GenoFreeze ON GenoFreeze.Id = GenoXRef.GenoFreezeId " "WHERE " - "GenoXRef.GenoFreezeId = GenoFreeze.Id " - "AND GenoXRef.GenoId = Geno.Id " - "AND GenoFreeze.Name = %(trait_dataset_name)s " + "GenoFreeze.Name = %(trait_dataset_name)s " "AND Geno.Name = %(trait_name)s"), trait_source) @@ -232,20 +231,21 @@ class TestTraitsDBFunctions(TestCase): error=2.3, count=2), (1, 1, 1)) cursor.execute.assert_has_calls( - [mock.call('SELECT Strain.Id, PublishData.Id FROM' - ' (PublishData, Strain, PublishXRef, ' - 'PublishFreeze) LEFT JOIN PublishSE ON ' - '(PublishSE.DataId = PublishData.Id ' - 'AND PublishSE.StrainId = ' - 'PublishData.StrainId) LEFT JOIN NStrain ON ' - '(NStrain.DataId = PublishData.Id AND ' - 'NStrain.StrainId = PublishData.StrainId) WHERE ' - 'PublishXRef.InbredSetId = ' - 'PublishFreeze.InbredSetId AND PublishData.Id = ' - 'PublishXRef.DataId AND PublishXRef.Id = 1 AND ' - 'PublishXRef.PhenotypeId = 10 AND ' - 'PublishData.StrainId = Strain.Id AND ' - 'Strain.Name = "BXD11"'), + [mock.call(('SELECT Strain.Id, PublishData.Id FROM' + ' (PublishData, Strain, PublishXRef, ' + 'PublishFreeze) LEFT JOIN PublishSE ON ' + '(PublishSE.DataId = PublishData.Id ' + 'AND PublishSE.StrainId = ' + 'PublishData.StrainId) LEFT JOIN NStrain ON ' + '(NStrain.DataId = PublishData.Id AND ' + 'NStrain.StrainId = PublishData.StrainId) WHERE ' + 'PublishXRef.InbredSetId = ' + 'PublishFreeze.InbredSetId AND PublishData.Id = ' + 'PublishXRef.DataId AND PublishXRef.Id = %s AND ' + 'PublishXRef.PhenotypeId = %s AND ' + 'PublishData.StrainId = Strain.Id AND ' + 'Strain.Name = %s'), + ("1", 10, "BXD11")), mock.call(PUBLISH_DATA_SQL, (18.7, 1, 1)), mock.call(PUBLISH_SE_SQL, (2.3, 1, 1)), mock.call(N_STRAIN_SQL, (2, 1, 1))] |