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| author | Frederick Muriuki Muriithi | 2021-11-19 10:40:02 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-19 10:40:02 +0300 |
| commit | 6367350202a4a7eb9c6551d01cc1b4543d2529f0 (patch) | |
| tree | 620c13ecc1aa7ae20aa7e15956ed69f9d7579396 /tests | |
| parent | 7d4f6d4687f5f821ab03c9b02d235cca00596331 (diff) | |
| download | genenetwork3-6367350202a4a7eb9c6551d01cc1b4543d2529f0.tar.gz | |
Replace use of assert_allclose. Disable linter error
Notes:
https://github.com/genenetwork/genenetwork3/pull/56#issuecomment-973798918
* From the notes above, the assert_allclose is a better function for figuring
out what failed, unlike the allclose that simply just returns a True/False
value.
This commit restores the use of the assert_allclose function, and then
disables the linter error due to the fact that there is no use of the `self`
keyword.
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/unit/test_heatmaps.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tests/unit/test_heatmaps.py b/tests/unit/test_heatmaps.py index 69e1c3c..a88341b 100644 --- a/tests/unit/test_heatmaps.py +++ b/tests/unit/test_heatmaps.py @@ -1,7 +1,7 @@ """Module contains tests for gn3.heatmaps.heatmaps""" from unittest import TestCase -from numpy import allclose +from numpy.testing import assert_allclose from gn3.heatmaps import ( cluster_traits, @@ -27,7 +27,7 @@ slinked = ( class TestHeatmap(TestCase): """Class for testing heatmap computation functions""" - def test_cluster_traits(self): + def test_cluster_traits(self): # pylint: disable=R0201 """ Test that the clustering is working as expected. """ @@ -42,7 +42,7 @@ class TestHeatmap(TestCase): (6.84118, 7.08432, 7.59844, 7.08229, 7.26774, 7.24991), (9.45215, 10.6943, 8.64719, 10.1592, 7.75044, 8.78615), (7.04737, 6.87185, 7.58586, 6.92456, 6.84243, 7.36913)] - self.assertTrue(allclose( + assert_allclose( cluster_traits(traits_data_list), ((0.0, 0.20337048635536847, 0.16381088984330505, 1.7388553629398245, 1.5025235756329178, 0.6952839500255574, 1.271661230252733, @@ -74,7 +74,7 @@ class TestHeatmap(TestCase): (0.7934461515867415, 0.4497104244247795, 0.7127042590637039, 0.9313185954797953, 1.1683723389247052, 0.23451785425383564, 1.7413442197913358, 0.33370067057028485, 1.3256191648260216, - 0.0)))) + 0.0))) def test_compute_heatmap_order(self): """Test the orders.""" |