diff options
| author | Frederick Muriuki Muriithi | 2021-11-01 08:18:48 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-01 08:18:48 +0300 |
| commit | 37cf87e94a44ba2ab26a8e458e0c5a90fe5ecc7a (patch) | |
| tree | 74ab24ef436772c9abac569c816539c20fa7b5e7 /tests | |
| parent | d4919b2b59facb79ccad155e1d2826a97119ec28 (diff) | |
| download | genenetwork3-37cf87e94a44ba2ab26a8e458e0c5a90fe5ecc7a.tar.gz | |
Retrieve indices of the selected samples
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* gn3/computations/partial_correlations.py: New
function (good_dataset_samples_indexes).
* tests/unit/computations/test_partial_correlations.py: Tests for new
function (good_dataset_samples_indexes)
Get the indices of the selected samples. This is a partial migration of the
`web.webqtl.correlation.PartialCorrDBPage.getPartialCorrelationsFast`
function in GN1.
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/unit/computations/test_partial_correlations.py | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/tests/unit/computations/test_partial_correlations.py b/tests/unit/computations/test_partial_correlations.py index c4ec79a..f7217a9 100644 --- a/tests/unit/computations/test_partial_correlations.py +++ b/tests/unit/computations/test_partial_correlations.py @@ -6,7 +6,8 @@ from gn3.computations.partial_correlations import ( control_samples, dictify_by_samples, tissue_correlation, - find_identical_traits) + find_identical_traits, + good_dataset_samples_indexes) sampleslist = ["B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"] control_traits = ( @@ -260,3 +261,13 @@ class TestPartialCorrelations(TestCase): with self.subTest(primary=primary, target=target, method=method): self.assertEqual( tissue_correlation(primary, target, method), expected) + + def test_good_dataset_samples_indexes(self): + """ + Test that `good_dataset_samples_indexes` returns correct indices. + """ + self.assertEqual( + good_dataset_samples_indexes( + ("a", "e", "i", "k"), + ("a", "b", "c", "d", "e", "f", "g", "h", "i", "j", "k", "l")), + (0, 4, 8, 10)) |