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author | BonfaceKilz | 2022-03-01 15:41:56 +0300 |
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committer | BonfaceKilz | 2022-03-12 15:33:09 +0300 |
commit | b6ecd0888ccf51b1dd2bfcbbbc4e03b1c5a92699 (patch) | |
tree | 59801fba61b68fb9d3f21e6441d033a57ac592b0 /tests | |
parent | 59d2d0a8175c4a06c5363a8a3d3addd683ef9a8d (diff) | |
download | genenetwork3-b6ecd0888ccf51b1dd2bfcbbbc4e03b1c5a92699.tar.gz |
Extract a strain name given a csv string and it's header
* gn3/csvcmp.py (extract_strain_name): New function.
* gn3/db/sample_data (delete_sample_data): Use the aforementioned function.
(insert_sample_data): Ditto.
* tests/unit/test_csvcmp: Test cases for above.
Diffstat (limited to 'tests')
-rw-r--r-- | tests/unit/test_csvcmp.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/tests/unit/test_csvcmp.py b/tests/unit/test_csvcmp.py index 4a96f99..fd7aa28 100644 --- a/tests/unit/test_csvcmp.py +++ b/tests/unit/test_csvcmp.py @@ -1,6 +1,7 @@ from gn3.csvcmp import csv_diff from gn3.csvcmp import fill_csv from gn3.csvcmp import remove_insignificant_edits +from gn3.csvcmp import extract_strain_name import pytest @@ -99,3 +100,10 @@ BXD15,14,x,x 'Additions': [], 'Deletions': [], 'Modifications': []}) + + +@pytest.mark.unit_test +def test_extract_strain_name(): + assert(extract_strain_name(csv_header="Strain Name,Value,SE,Count", + data="BXD1,18,x,0") == + "BXD1") |