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authorBonfaceKilz2021-03-03 10:58:55 +0300
committerBonfaceKilz2021-03-08 21:09:58 +0300
commit9dff9888f81b7eec0e698466518ce4cb55b8bd8c (patch)
treebdd937882498267d1f51864af779a7d8294e014d /tests
parent5000815bdcb5f85a2898831589849088e50b93f2 (diff)
downloadgenenetwork3-9dff9888f81b7eec0e698466518ce4cb55b8bd8c.tar.gz
Delete "lookup_file" procedure
Diffstat (limited to 'tests')
-rw-r--r--tests/unit/test_file_utils.py29
1 files changed, 0 insertions, 29 deletions
diff --git a/tests/unit/test_file_utils.py b/tests/unit/test_file_utils.py
index 7f4d83d..af86ba8 100644
--- a/tests/unit/test_file_utils.py
+++ b/tests/unit/test_file_utils.py
@@ -8,7 +8,6 @@ from unittest import mock
from gn3.file_utils import extract_uploaded_file
from gn3.file_utils import get_dir_hash
from gn3.file_utils import jsonfile_to_dict
-from gn3.file_utils import lookup_file
@dataclass
@@ -32,34 +31,6 @@ class TestFileUtils(unittest.TestCase):
get_dir_hash,
"/non-existent-file")
- @mock.patch("os.path.isfile")
- @mock.patch.dict(os.environ, {"GENENETWORK_FILES": "/tmp/"})
- def test_lookup_genotype_file_exists(self, mock_isfile):
- """Test whether genotype file exists if file is present"""
- mock_isfile.return_value = True
- self.assertEqual(lookup_file("GENENETWORK_FILES",
- "genotype_files", "genotype.txt"),
- "/tmp/genotype_files/genotype.txt")
-
- @mock.patch("os.path.isfile")
- @mock.patch.dict(os.environ, {"GENENETWORK_FILES": "/tmp"})
- def test_lookup_genotype_file_does_not_exist(self, mock_isfile):
- """Test whether genotype file exists if file is absent"""
- mock_isfile.return_value = False
- self.assertRaises(FileNotFoundError,
- lookup_file,
- "GENENETWORK_FILES",
- "genotype_files",
- "genotype.txt")
-
- def test_lookup_genotype_file_env_does_not_exist(self):
- """Test whether genotype file exists if GENENETWORK_FILES is absent"""
- self.assertRaises(FileNotFoundError,
- lookup_file,
- "GENENETWORK_FILES",
- "genotype_files",
- "genotype.txt")
-
def test_jsonfile_to_dict(self):
"""Test that a json file is parsed correctly"""""
json_file = os.path.join(os.path.dirname(__file__),