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author | Frederick Muriuki Muriithi | 2022-02-21 16:21:31 +0300 |
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committer | Frederick Muriuki Muriithi | 2022-02-21 16:21:31 +0300 |
commit | c84b07b8c5ac0a42c0fab929c75823b30b548191 (patch) | |
tree | 8c70ba6eeea9c113900f85836b906ba0a9b8f001 /tests/unit | |
parent | f914dc21577253f293b50b890ea0ac4bd2fd5d1b (diff) | |
download | genenetwork3-c84b07b8c5ac0a42c0fab929c75823b30b548191.tar.gz |
Add test to ensure samples are read correctly from .geno files
* tests/unit/db/test_genotypes2.py: New file
Diffstat (limited to 'tests/unit')
-rw-r--r-- | tests/unit/db/test_genotypes2.py | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/tests/unit/db/test_genotypes2.py b/tests/unit/db/test_genotypes2.py new file mode 100644 index 0000000..453120b --- /dev/null +++ b/tests/unit/db/test_genotypes2.py @@ -0,0 +1,13 @@ +"""Module to test functions in gn3.db.genotypes""" + +import pytest + +from gn3.db.genotypes import load_genotype_samples + +@pytest.mark.unit_test +@pytest.mark.parametrize( + "genotype_filename,file_type,expected", ( + ("tests/unit/test_data/genotype.txt", "geno", ("BXD1","BXD2")),)) +def test_load_genotype_samples(genotype_filename, file_type, expected): + """Test that the genotype samples are loaded correctly""" + assert load_genotype_samples(genotype_filename, file_type) == expected |