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author | Frederick Muriuki Muriithi | 2021-11-18 11:59:53 +0300 |
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committer | Frederick Muriuki Muriithi | 2021-11-18 11:59:53 +0300 |
commit | 3dd5fbda7e08999b6470cfe1fbbd19d767adea9b (patch) | |
tree | fed4d0ae18d8d39a35184c7e9d80bd942c9f37a3 /tests/unit/test_heatmaps.py | |
parent | 21fbbfd599c841f082d88ddfc5f4cb362e1eb869 (diff) | |
download | genenetwork3-3dd5fbda7e08999b6470cfe1fbbd19d767adea9b.tar.gz |
Fix some linting errors
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Fix some obvious linting errors and remove obsolete code
Diffstat (limited to 'tests/unit/test_heatmaps.py')
-rw-r--r-- | tests/unit/test_heatmaps.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/tests/unit/test_heatmaps.py b/tests/unit/test_heatmaps.py index e4c929d..69e1c3c 100644 --- a/tests/unit/test_heatmaps.py +++ b/tests/unit/test_heatmaps.py @@ -1,6 +1,8 @@ """Module contains tests for gn3.heatmaps.heatmaps""" from unittest import TestCase -from numpy.testing import assert_allclose + +from numpy import allclose + from gn3.heatmaps import ( cluster_traits, get_loci_names, @@ -40,7 +42,7 @@ class TestHeatmap(TestCase): (6.84118, 7.08432, 7.59844, 7.08229, 7.26774, 7.24991), (9.45215, 10.6943, 8.64719, 10.1592, 7.75044, 8.78615), (7.04737, 6.87185, 7.58586, 6.92456, 6.84243, 7.36913)] - assert_allclose( + self.assertTrue(allclose( cluster_traits(traits_data_list), ((0.0, 0.20337048635536847, 0.16381088984330505, 1.7388553629398245, 1.5025235756329178, 0.6952839500255574, 1.271661230252733, @@ -72,7 +74,7 @@ class TestHeatmap(TestCase): (0.7934461515867415, 0.4497104244247795, 0.7127042590637039, 0.9313185954797953, 1.1683723389247052, 0.23451785425383564, 1.7413442197913358, 0.33370067057028485, 1.3256191648260216, - 0.0))) + 0.0)))) def test_compute_heatmap_order(self): """Test the orders.""" |