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authorFrederick Muriuki Muriithi2021-11-18 11:59:53 +0300
committerFrederick Muriuki Muriithi2021-11-18 11:59:53 +0300
commit3dd5fbda7e08999b6470cfe1fbbd19d767adea9b (patch)
treefed4d0ae18d8d39a35184c7e9d80bd942c9f37a3 /tests/unit/test_heatmaps.py
parent21fbbfd599c841f082d88ddfc5f4cb362e1eb869 (diff)
downloadgenenetwork3-3dd5fbda7e08999b6470cfe1fbbd19d767adea9b.tar.gz
Fix some linting errors
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Fix some obvious linting errors and remove obsolete code
Diffstat (limited to 'tests/unit/test_heatmaps.py')
-rw-r--r--tests/unit/test_heatmaps.py8
1 files changed, 5 insertions, 3 deletions
diff --git a/tests/unit/test_heatmaps.py b/tests/unit/test_heatmaps.py
index e4c929d..69e1c3c 100644
--- a/tests/unit/test_heatmaps.py
+++ b/tests/unit/test_heatmaps.py
@@ -1,6 +1,8 @@
"""Module contains tests for gn3.heatmaps.heatmaps"""
from unittest import TestCase
-from numpy.testing import assert_allclose
+
+from numpy import allclose
+
from gn3.heatmaps import (
cluster_traits,
get_loci_names,
@@ -40,7 +42,7 @@ class TestHeatmap(TestCase):
(6.84118, 7.08432, 7.59844, 7.08229, 7.26774, 7.24991),
(9.45215, 10.6943, 8.64719, 10.1592, 7.75044, 8.78615),
(7.04737, 6.87185, 7.58586, 6.92456, 6.84243, 7.36913)]
- assert_allclose(
+ self.assertTrue(allclose(
cluster_traits(traits_data_list),
((0.0, 0.20337048635536847, 0.16381088984330505, 1.7388553629398245,
1.5025235756329178, 0.6952839500255574, 1.271661230252733,
@@ -72,7 +74,7 @@ class TestHeatmap(TestCase):
(0.7934461515867415, 0.4497104244247795, 0.7127042590637039,
0.9313185954797953, 1.1683723389247052, 0.23451785425383564,
1.7413442197913358, 0.33370067057028485, 1.3256191648260216,
- 0.0)))
+ 0.0))))
def test_compute_heatmap_order(self):
"""Test the orders."""