Fix tests, and issues caught by tests

Fix some issues caught by tests due to changes introducing the hand-off of the
partial correlations computations to an external process

Fix some issues due to the changes that introduce context managers for
database connections

Update some tests to take the above two changes into consideration

1 files changed, 6 insertions, 7 deletions

diff --git a/tests/unit/test_commands.py b/tests/unit/test_commands.py
index e0efaf7..4dd8735 100644
--- a/tests/unit/test_commands.py
+++ b/tests/unit/test_commands.py
@@ -96,8 +96,7 @@ class TestCommands(unittest.TestCase):
     @pytest.mark.unit_test
     @mock.patch("gn3.commands.datetime")
     @mock.patch("gn3.commands.uuid4")
-    def test_queue_cmd_correct_calls_to_redis(self, mock_uuid4,
-                                              mock_datetime):
+    def test_queue_cmd_correct_calls_to_redis(self, mock_uuid4, mock_datetime):
         """Test that the cmd is queued properly"""
         mock_uuid4.return_value = 1234
         mock_datetime.now.return_value = datetime.fromisoformat('2021-02-12 '
@@ -112,7 +111,7 @@ class TestCommands(unittest.TestCase):
                                    job_queue="GN2::job-queue"),
                          actual_unique_id)
         mock_redis_conn.hset.assert_has_calls(
-            [mock.call(name=actual_unique_id, key="cmd", value="ls"),
+            [mock.call(name=actual_unique_id, key="cmd", value='"ls"'),
              mock.call(name=actual_unique_id, key="result", value=""),
              mock.call(name=actual_unique_id, key="status", value="queued")])
         mock_redis_conn.rpush.assert_has_calls(
@@ -139,23 +138,23 @@ class TestCommands(unittest.TestCase):
                                    email="me@me.com"),
                          actual_unique_id)
         mock_redis_conn.hset.assert_has_calls(
-            [mock.call(name=actual_unique_id, key="cmd", value="ls"),
+            [mock.call(name=actual_unique_id, key="cmd", value='"ls"'),
              mock.call(name=actual_unique_id, key="result", value=""),
              mock.call(name=actual_unique_id, key="status", value="queued"),
              mock.call(name=actual_unique_id, key="email", value="me@me.com")
-             ])
+             ], any_order=True)
         mock_redis_conn.rpush.assert_has_calls(
             [mock.call("GN2::job-queue", actual_unique_id)])
 
     @pytest.mark.unit_test
     def test_run_cmd_correct_input(self):
         """Test that a correct cmd is processed correctly"""
-        self.assertEqual(run_cmd("echo test"),
+        self.assertEqual(run_cmd('"echo test"'),
                          {"code": 0, "output": "test\n"})
 
     @pytest.mark.unit_test
     def test_run_cmd_incorrect_input(self):
         """Test that an incorrect cmd is processed correctly"""
-        result = run_cmd("echoo test")
+        result = run_cmd('"echoo test"')
         self.assertEqual(127, result.get("code"))
         self.assertIn("not found", result.get("output"))