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authorBonfaceKilz2022-04-05 15:12:07 +0300
committerBonfaceKilz2022-04-07 11:54:28 +0300
commit9e905e596f2b1b17ad78a86fff01aafe1cc8b108 (patch)
tree73a5c7ac71aa93dafae752f06fb04d79a92fe2e4 /tests/unit/db
parentfdae7b15c4f5f29a16a55713937d49d7331cdfad (diff)
downloadgenenetwork3-9e905e596f2b1b17ad78a86fff01aafe1cc8b108.tar.gz
Add method for fetching the case_attributes
* gn3/db/sample_data.py (get_case_attributes): New function. * tests/unit/db/test_sample_data.py (test_get_case_attributes): Test case for the above.
Diffstat (limited to 'tests/unit/db')
-rw-r--r--tests/unit/db/test_sample_data.py26
1 files changed, 26 insertions, 0 deletions
diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py
index 607b278..dad7169 100644
--- a/tests/unit/db/test_sample_data.py
+++ b/tests/unit/db/test_sample_data.py
@@ -4,6 +4,7 @@ import gn3
from gn3.db.sample_data import __extract_actions
from gn3.db.sample_data import delete_sample_data
+from gn3.db.sample_data import get_case_attributes
from gn3.db.sample_data import insert_sample_data
from gn3.db.sample_data import update_sample_data
@@ -194,3 +195,28 @@ def test_update_sample_data(mocker):
],
any_order=False,
)
+
+
+@pytest.mark.unit_test
+def test_get_case_attributes(mocker):
+ """Test that case attributes work well"""
+ mock_conn = mocker.MagicMock()
+ with mock_conn.cursor() as cursor:
+ cursor.fetchall.return_value = (
+ (1, "Condition", None),
+ (2, "Tissue", None),
+ (3, "Age", "Cum sociis natoque penatibus et magnis dis"),
+ (4, "Condition", "Description A"),
+ (5, "Condition", "Description B"),
+ )
+ results = get_case_attributes(mock_conn)
+ cursor.execute.assert_called_once_with(
+ "SELECT Id, Name, Description FROM CaseAttribute"
+ )
+ assert results == {
+ "Condition (1)": "",
+ "Tissue": "",
+ "Age": "Cum sociis natoque penatibus et magnis dis",
+ "Condition (4)": "Description A",
+ "Condition (5)": "Description B",
+ }