aboutsummaryrefslogtreecommitdiff
path: root/tests/unit/computations
diff options
context:
space:
mode:
authorArun Isaac2021-11-11 14:43:37 +0530
committerBonfaceKilz2021-11-11 20:49:30 +0300
commitfb92e75b8e9984fbbf9b26f87b53ea516a8819da (patch)
tree8c54998e266cbcc28481fdf8762334e743e9b6de /tests/unit/computations
parent249b85102063debfeeb1b0565956059b8a3af1cf (diff)
downloadgenenetwork3-fb92e75b8e9984fbbf9b26f87b53ea516a8819da.tar.gz
Compare floats approximately.
Floating point numbers should only be compared approximately. Different implementations of functions might produce slightly different results. * tests/unit/computations/test_correlation.py: Import assert_almost_equal from numpy.testing. (TestCorrelation.test_compute_correlation): Compare floats using assert_almost_equal instead of assertEqual. * tests/unit/test_heatmaps.py: Import assert_allclose from numpy.testing. (TestHeatmap.test_cluster_traits): Use assert_allclose instead of assertEqual.
Diffstat (limited to 'tests/unit/computations')
-rw-r--r--tests/unit/computations/test_correlation.py8
1 files changed, 6 insertions, 2 deletions
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py
index 706520a..e6cf198 100644
--- a/tests/unit/computations/test_correlation.py
+++ b/tests/unit/computations/test_correlation.py
@@ -4,6 +4,7 @@ from unittest import mock
import unittest
from collections import namedtuple
+from numpy.testing import assert_almost_equal
from gn3.computations.correlations import normalize_values
from gn3.computations.correlations import compute_sample_r_correlation
@@ -481,5 +482,8 @@ class TestCorrelation(TestCase):
[None, None, None, None, 2, None, None, 3, None, None],
(0.0, 2)]]:
with self.subTest(dbdata=dbdata, userdata=userdata):
- self.assertEqual(compute_correlation(
- dbdata, userdata), expected)
+ actual = compute_correlation(dbdata, userdata)
+ with self.subTest("correlation coefficient"):
+ assert_almost_equal(actual[0], expected[0])
+ with self.subTest("overlap"):
+ self.assertEqual(actual[1], expected[1])