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authorAlexander Kabui2021-03-30 18:12:58 +0300
committerAlexander Kabui2021-03-30 18:12:58 +0300
commite6f10522833cbd75441766e5b8656b3f5925d6d7 (patch)
tree99ad19a80f3a22307164c4d6e0450e527a060640 /tests/unit/computations
parent5151987063eab58b10a2dd8e831ec036df217531 (diff)
downloadgenenetwork3-e6f10522833cbd75441766e5b8656b3f5925d6d7.tar.gz
initial commit for creating trait and datasets
Diffstat (limited to 'tests/unit/computations')
-rw-r--r--tests/unit/computations/test_trait.py81
1 files changed, 81 insertions, 0 deletions
diff --git a/tests/unit/computations/test_trait.py b/tests/unit/computations/test_trait.py
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+++ b/tests/unit/computations/test_trait.py
@@ -0,0 +1,81 @@
+"""module contains tests for creating traits"""
+from unittest import TestCase
+from unittest import mock
+
+from gn3.computations.traits import compute_sum
+from gn3.computations.traits import fetch_trait
+from gn3.computations.traits import get_trait_sample_data
+from gn3.computations.traits import get_trait_info_data
+
+
+class TestTrait(TestCase):
+ """class contains tests for creating traits"""
+
+ def test_sum(self):
+ """initial faling tests"""
+ results = compute_sum(2, 5)
+ self.assertEqual(results, 7)
+
+ @mock.patch("gn3.computations.traits.get_trait_sample_data")
+ def test_fetch_trait(self, get_sample_data):
+ """test for creating/fetching trait"""
+
+ expected_sample_data = {
+ "A/Y": 12.3,
+ "WQC": 11.1
+ }
+
+ get_sample_data.return_value = expected_sample_data
+
+ expected_trait = {
+ "trait_name": "AXFDSF_AT",
+ "dataset": None,
+ "trait_data": expected_sample_data
+ }
+ results = fetch_trait(dataset=None, trait_name="AXFDSF_AT")
+
+ self.assertEqual(results, expected_trait)
+ get_sample_data.assert_called_once_with(None, "AXFDSF_AT")
+
+ def test_get_trait_sample_data(self):
+ """test for getting sample data from either\
+ the trait's dataset or form redis"""
+
+ trait_dataset = mock.Mock()
+ dataset_trait_sample_data = [
+ ('129S1/SvImJ', 7.433, None, None, '129S1/SvImJ'),
+ ('A/J', 7.596, None, None, 'A/J'),
+ ('AKR/J', 7.774, None, None, 'AKR/J'),
+ ('B6D2F1', 7.707, None, None, 'B6D2F1')]
+ trait_dataset.retrieve_sample_data.return_value = dataset_trait_sample_data
+
+ trait_name = "1426679_at"
+
+ results = get_trait_sample_data(
+ trait_dataset, trait_name)
+
+ expected_results = {
+ "129S1/SvImJ": 7.433,
+ "A/J": 7.596,
+ "AKR/J": 7.774,
+ "B6D2F1": 7.707
+ }
+
+ self.assertEqual(results, expected_results)
+
+ def test_get_trait_info_data(self):
+ """test for getting info data related\
+ to trait"""
+
+ results = get_trait_info_data(
+ trait_name="AXSF_AT", trait_dataset=mock.Mock(), database_instance=None)
+ expected_trait_info = {
+ "description": "",
+ "trait_display_name": "",
+ "abbreviation": "",
+ "chr": "",
+ "mb": "",
+ "locus": ""
+ }
+
+ self.assertEqual(results, expected_trait_info)