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authorAlexander Kabui2021-04-03 13:12:59 +0300
committerAlexander Kabui2021-04-03 13:12:59 +0300
commitd2e24157130ea28a8ac5e7a4511074bb82b6d634 (patch)
tree6328fc0a17e2df8d3095224d54313f69b7d01601 /tests/unit/computations
parente4cf6ac08a961f8d647f46a6d984d8d66d9f83ae (diff)
downloadgenenetwork3-d2e24157130ea28a8ac5e7a4511074bb82b6d634.tar.gz
add tests for getting trait data
Diffstat (limited to 'tests/unit/computations')
-rw-r--r--tests/unit/computations/test_datasets.py28
1 files changed, 28 insertions, 0 deletions
diff --git a/tests/unit/computations/test_datasets.py b/tests/unit/computations/test_datasets.py
index b169ba3..1b37d26 100644
--- a/tests/unit/computations/test_datasets.py
+++ b/tests/unit/computations/test_datasets.py
@@ -14,6 +14,8 @@ from gn3.computations.datasets import dataset_creator_store
from gn3.computations.datasets import dataset_type_getter
from gn3.computations.datasets import fetch_dataset_type_from_gn2_api
from gn3.computations.datasets import fetch_dataset_sample_id
+from gn3.computations.datasets import divide_into_chunks
+from gn3.computations.datasets import get_traits_data
class TestDatasets(TestCase):
@@ -179,3 +181,29 @@ class TestDatasets(TestCase):
samplelist=strain_list, database=database_instance, species="mouse")
self.assertEqual(results, expected_results)
+
+ @mock.patch("gn3.computations.datasets.fetch_from_db_sample_data")
+ @mock.patch("gn3.computations.datasets.divide_into_chunks")
+ def test_get_traits_data(self, mock_divide_into_chunks, mock_fetch_samples):
+ """test for for function to get data\
+ of traits in dataset"""
+
+ expected_results = {'AT_DSAFDS': [
+ 12, 14, 13, 23, 12, 14, 13, 23, 12, 14, 13, 23]}
+ database = mock.Mock()
+ sample_id = [1, 2, 7, 3, 22, 8]
+ mock_divide_into_chunks.return_value = [
+ [1, 2, 7], [3, 22, 8], [5, 22, 333]]
+ mock_fetch_samples.return_value = ("AT_DSAFDS", 12, 14, 13, 23)
+ results = get_traits_data(sample_id, database, "HC_M2", "Publish")
+
+ self.assertEqual(expected_results, dict(results))
+
+ def test_divide_into_chunks(self):
+ """test for dividing a list into given number of\
+ chunks for example"""
+ results = divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 3)
+
+ expected_results = [[1, 2, 7], [3, 22, 8], [5, 22, 333]]
+
+ self.assertEqual(results, expected_results)