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| author | Frederick Muriuki Muriithi | 2021-11-04 12:43:28 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-04 12:43:28 +0300 |
| commit | 9647226ea4c85449581df713c2bb583aeed6940f (patch) | |
| tree | 15fa41d729552af2dac2843f91fa792241102061 /tests/unit/computations | |
| parent | 0357f5c5e6eeb146eb259337019c87079363a256 (diff) | |
| download | genenetwork3-9647226ea4c85449581df713c2bb583aeed6940f.tar.gz | |
Partially implement `partial_correlation_recursive`
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* gn3/computations/partial_correlations.py: Implement one path for the
`gn3.computations.partial_correlations.partial_correlation_recursive`
function.
* gn3/settings.py: Add a setting for how many decimal places to round to
* tests/unit/computations/test_partial_correlations.py: Update test to take
the number of decimal places into consideration
Implement a single path (where the z value is a vector and not a matrix) for
the `partial_correlation_recursive` function.
Diffstat (limited to 'tests/unit/computations')
| -rw-r--r-- | tests/unit/computations/test_partial_correlations.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/tests/unit/computations/test_partial_correlations.py b/tests/unit/computations/test_partial_correlations.py index b22bc62..981801a 100644 --- a/tests/unit/computations/test_partial_correlations.py +++ b/tests/unit/computations/test_partial_correlations.py @@ -4,6 +4,8 @@ import csv from unittest import TestCase import pandas + +from gn3.settings import ROUND_TO from gn3.computations.partial_correlations import ( fix_samples, control_samples, @@ -115,7 +117,7 @@ def parse_test_data_csv(filename): "z": __str__to_tuple(line, "z"), "method": methods[line["method"]], "rm": line["rm"] == "TRUE", - "result": float(line["result"]) + "result": round(float(line["result"]), ROUND_TO) } for line in lines) class TestPartialCorrelations(TestCase): |