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| author | Frederick Muriuki Muriithi | 2021-11-01 08:33:26 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-01 08:33:26 +0300 |
| commit | b56341f9144623cc41bc815b337490ace04b2495 (patch) | |
| tree | e568d94460585155d752bdf75fd7205699251bf2 /tests/unit/computations | |
| parent | 37cf87e94a44ba2ab26a8e458e0c5a90fe5ecc7a (diff) | |
| parent | 8f036415975d6e224e5e94277997329c0f1fa159 (diff) | |
| download | genenetwork3-b56341f9144623cc41bc815b337490ace04b2495.tar.gz | |
Merge branch 'main' of github.com:genenetwork/genenetwork3 into partial-correlations
Diffstat (limited to 'tests/unit/computations')
| -rw-r--r-- | tests/unit/computations/test_biweight.py | 21 | ||||
| -rw-r--r-- | tests/unit/computations/test_correlation.py | 11 |
2 files changed, 0 insertions, 32 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py deleted file mode 100644 index ad404f1..0000000 --- a/tests/unit/computations/test_biweight.py +++ /dev/null @@ -1,21 +0,0 @@ -"""test for biweight script""" -from unittest import TestCase -from unittest import mock - -from gn3.computations.biweight import calculate_biweight_corr - - -class TestBiweight(TestCase): - """test class for biweight""" - - @mock.patch("gn3.computations.biweight.subprocess.check_output") - def test_calculate_biweight_corr(self, mock_check_output): - """test for calculate_biweight_corr func""" - mock_check_output.return_value = "0.1 0.5" - results = calculate_biweight_corr(command="Rscript", - path_to_script="./r_script.R", - trait_vals=[ - 1.2, 1.1, 1.9], - target_vals=[1.9, 0.4, 1.1]) - - self.assertEqual(results, (0.1, 0.5)) diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py index fc52ec1..96d9c6d 100644 --- a/tests/unit/computations/test_correlation.py +++ b/tests/unit/computations/test_correlation.py @@ -5,7 +5,6 @@ from unittest import mock from collections import namedtuple from gn3.computations.correlations import normalize_values -from gn3.computations.correlations import do_bicor from gn3.computations.correlations import compute_sample_r_correlation from gn3.computations.correlations import compute_all_sample_correlation from gn3.computations.correlations import filter_shared_sample_keys @@ -98,16 +97,6 @@ class TestCorrelation(TestCase): self.assertEqual(results, expected_results) - @mock.patch("gn3.computations.correlations.calculate_biweight_corr") - def test_bicor(self, mock_biweight): - """Test for doing biweight mid correlation """ - mock_biweight.return_value = (1.0, 0.0) - - results = do_bicor(x_val=[1, 2, 3], y_val=[4, 5, 6]) - - self.assertEqual(results, (1.0, 0.0) - ) - @mock.patch("gn3.computations.correlations.compute_corr_coeff_p_value") @mock.patch("gn3.computations.correlations.normalize_values") def test_compute_sample_r_correlation(self, norm_vals, compute_corr): |