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author | Arun Isaac | 2021-11-11 14:43:37 +0530 |
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committer | BonfaceKilz | 2021-11-11 20:49:30 +0300 |
commit | fb92e75b8e9984fbbf9b26f87b53ea516a8819da (patch) | |
tree | 8c54998e266cbcc28481fdf8762334e743e9b6de /tests/unit/computations | |
parent | 249b85102063debfeeb1b0565956059b8a3af1cf (diff) | |
download | genenetwork3-fb92e75b8e9984fbbf9b26f87b53ea516a8819da.tar.gz |
Compare floats approximately.
Floating point numbers should only be compared approximately. Different
implementations of functions might produce slightly different results.
* tests/unit/computations/test_correlation.py: Import assert_almost_equal from
numpy.testing.
(TestCorrelation.test_compute_correlation): Compare floats using
assert_almost_equal instead of assertEqual.
* tests/unit/test_heatmaps.py: Import assert_allclose from numpy.testing.
(TestHeatmap.test_cluster_traits): Use assert_allclose instead of assertEqual.
Diffstat (limited to 'tests/unit/computations')
-rw-r--r-- | tests/unit/computations/test_correlation.py | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py index 706520a..e6cf198 100644 --- a/tests/unit/computations/test_correlation.py +++ b/tests/unit/computations/test_correlation.py @@ -4,6 +4,7 @@ from unittest import mock import unittest from collections import namedtuple +from numpy.testing import assert_almost_equal from gn3.computations.correlations import normalize_values from gn3.computations.correlations import compute_sample_r_correlation @@ -481,5 +482,8 @@ class TestCorrelation(TestCase): [None, None, None, None, 2, None, None, 3, None, None], (0.0, 2)]]: with self.subTest(dbdata=dbdata, userdata=userdata): - self.assertEqual(compute_correlation( - dbdata, userdata), expected) + actual = compute_correlation(dbdata, userdata) + with self.subTest("correlation coefficient"): + assert_almost_equal(actual[0], expected[0]) + with self.subTest("overlap"): + self.assertEqual(actual[1], expected[1]) |