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| author | Alexander Kabui | 2022-03-22 16:20:00 +0300 |
|---|---|---|
| committer | Alexander Kabui | 2022-03-22 16:20:00 +0300 |
| commit | bb622cc5947e6ea896d3b94a1d2c4e0cbd1b26f9 (patch) | |
| tree | c3e2a678f5e29ccd2b1dc3bb9f055eb02f8bb492 /tests/unit/computations | |
| parent | 7b2901817a1aabd947483f87b5a2a2d33618de7e (diff) | |
| download | genenetwork3-bb622cc5947e6ea896d3b94a1d2c4e0cbd1b26f9.tar.gz | |
rename compose_wgcna to general func name
Diffstat (limited to 'tests/unit/computations')
| -rw-r--r-- | tests/unit/computations/test_wgcna.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/tests/unit/computations/test_wgcna.py b/tests/unit/computations/test_wgcna.py index a9108b0..d6d2bf8 100644 --- a/tests/unit/computations/test_wgcna.py +++ b/tests/unit/computations/test_wgcna.py @@ -5,7 +5,7 @@ from unittest import mock import pytest from gn3.computations.wgcna import dump_wgcna_data -from gn3.computations.wgcna import compose_wgcna_cmd +from gn3.computations.wgcna import compose_rscript_cmd from gn3.computations.wgcna import call_wgcna_script @@ -15,7 +15,7 @@ class TestWgcna(TestCase): @pytest.mark.unit_test @mock.patch("gn3.computations.wgcna.process_image") @mock.patch("gn3.computations.wgcna.run_cmd") - @mock.patch("gn3.computations.wgcna.compose_wgcna_cmd") + @mock.patch("gn3.computations.wgcna.compose_rscript_cmd") @mock.patch("gn3.computations.wgcna.dump_wgcna_data") def test_call_wgcna_script(self, mock_dumping_data, @@ -100,7 +100,7 @@ class TestWgcna(TestCase): @pytest.mark.unit_test @mock.patch("gn3.computations.wgcna.run_cmd") - @mock.patch("gn3.computations.wgcna.compose_wgcna_cmd") + @mock.patch("gn3.computations.wgcna.compose_rscript_cmd") @mock.patch("gn3.computations.wgcna.dump_wgcna_data") def test_call_wgcna_script_fails(self, mock_dumping_data, mock_compose_wgcna, mock_run_cmd): """test for calling wgcna script\ @@ -122,9 +122,9 @@ class TestWgcna(TestCase): "input_file.R", ""), expected_error) @pytest.mark.unit_test - def test_compose_wgcna_cmd(self): + def test_compose_rscript_cmd(self): """test for composing wgcna cmd""" - wgcna_cmd = compose_wgcna_cmd( + wgcna_cmd = compose_rscript_cmd( "wgcna.r", "/tmp/wgcna.json") self.assertEqual( wgcna_cmd, "Rscript ./scripts/wgcna.r /tmp/wgcna.json") |