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authorAlexander_Kabui2022-06-22 13:01:19 +0300
committerBonfaceKilz2022-06-29 17:41:16 +0300
commit13a802c4a64d7bf0697e228398ba46e460a6b2f0 (patch)
tree93cfcadd94b440ceb37a8b67ad12f640b75b4bff /tests/unit/computations
parent5c0dceed7c99b435fc0471e763884737e8b4547c (diff)
downloadgenenetwork3-13a802c4a64d7bf0697e228398ba46e460a6b2f0.tar.gz
use explicit parameters
Diffstat (limited to 'tests/unit/computations')
-rw-r--r--tests/unit/computations/test_rust_correlation.py19
1 files changed, 8 insertions, 11 deletions
diff --git a/tests/unit/computations/test_rust_correlation.py b/tests/unit/computations/test_rust_correlation.py
index b402621..ac27dea 100644
--- a/tests/unit/computations/test_rust_correlation.py
+++ b/tests/unit/computations/test_rust_correlation.py
@@ -9,7 +9,6 @@ from gn3.computations.rust_correlation import generate_input_files
from gn3.computations.rust_correlation import parse_correlation_output
-
@pytest.mark.unit_test
def test_generate_input():
"""test generating text files"""
@@ -21,7 +20,8 @@ def test_generate_input():
]
- (_tmp_dir, tmp_file) = generate_input_files(test_dataset, output_dir="/tmp")
+ (_tmp_dir, tmp_file) = generate_input_files(test_dataset,
+ output_dir="/tmp")
with open(tmp_file, "r", encoding="utf-8") as file_reader:
test_results = [line.rstrip() for line in file_reader]
@@ -35,16 +35,13 @@ def test_generate_input():
def test_json_file():
"""test for generating json files """
- json_dict = {"tmp_dir": "/tmp/correlation",
-
- "tmp_file": "/data.txt",
- "method": "pearson",
- "file_path": "/data.txt",
- "x_vals": "12.1,11.3,16.5,7.5,3.2",
- "file_delimiter": ","}
- tmp_file = generate_json_file(**json_dict)
+ tmp_file = generate_json_file(tmp_dir="/tmp/correlation",
+ tmp_file="/data.txt",
+ method="pearson",
+ x_vals="12.1,11.3,16.5,7.5,3.2",
+ delimiter=",")
- with open(tmp_file, "r+",encoding="utf-8") as file_reader:
+ with open(tmp_file, "r+", encoding="utf-8") as file_reader:
results = json.load(file_reader)
assert results == {