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authorAlexander Kabui2021-05-02 23:54:56 +0300
committerAlexander Kabui2021-05-02 23:54:56 +0300
commit9f24b15064bcebcda9cf2164ab7b7e89644e3103 (patch)
tree7c36e4fd5b08720cfd0805352d56ca7cb1fc757b /tests/unit/computations/test_trait.py
parentf0ccff2a90d760fc0b268e715e0c6c673ff64e15 (diff)
downloadgenenetwork3-9f24b15064bcebcda9cf2164ab7b7e89644e3103.tar.gz
delete dataset and trait files
Diffstat (limited to 'tests/unit/computations/test_trait.py')
-rw-r--r--tests/unit/computations/test_trait.py84
1 files changed, 0 insertions, 84 deletions
diff --git a/tests/unit/computations/test_trait.py b/tests/unit/computations/test_trait.py
deleted file mode 100644
index feb97c6..0000000
--- a/tests/unit/computations/test_trait.py
+++ /dev/null
@@ -1,84 +0,0 @@
-"""Module contains tests for creating traits"""
-from unittest import TestCase
-from unittest import mock
-
-from gn3.computations.traits import fetch_trait
-from gn3.computations.traits import get_trait_sample_data
-from gn3.computations.traits import get_trait_info_data
-
-
-class TestTrait(TestCase):
- """Class contains tests for creating traits"""
-
- @mock.patch("gn3.computations.traits.get_trait_sample_data")
- def test_fetch_trait(self, get_sample_data):
- """Test for creating/fetching trait"""
-
- expected_sample_data = {
- "A/Y": 12.3,
- "WQC": 11.1
- }
-
- database = mock.Mock()
-
- get_sample_data.return_value = expected_sample_data
-
- expected_trait = {
- "trait_name": "AXFDSF_AT",
- "dataset": None,
- "trait_data": expected_sample_data
- }
- results = fetch_trait(dataset=None,
- trait_name="AXFDSF_AT",
- database=database)
-
- self.assertEqual(results, expected_trait)
- self.assertEqual(get_sample_data.call_count, 1)
-
- @mock.patch("gn3.computations.traits.retrieve_trait_sample_data")
- def test_get_trait_sample_data(self, mock_retrieve_sample_data):
- """Test for getting sample data from either\
- the trait's dataset or form redis
- """
-
- trait_dataset = mock.Mock()
- dataset_trait_sample_data = [
- ('129S1/SvImJ', 7.433, None, None, '129S1/SvImJ'),
- ('A/J', 7.596, None, None, 'A/J'),
- ('AKR/J', 7.774, None, None, 'AKR/J'),
- ('B6D2F1', 7.707, None, None, 'B6D2F1')]
- mock_retrieve_sample_data.return_value = dataset_trait_sample_data
-
- trait_name = "1426679_at"
-
- database = mock.Mock()
-
- results = get_trait_sample_data(
- trait_dataset, trait_name, database)
-
- expected_results = {
- "129S1/SvImJ": 7.433,
- "A/J": 7.596,
- "AKR/J": 7.774,
- "B6D2F1": 7.707
- }
-
- self.assertEqual(results, expected_results)
-
- def test_get_trait_info_data(self):
- """Test for getting info data related\
- to trait
- """
-
- results = get_trait_info_data(
- trait_name="AXSF_AT", trait_dataset=mock.Mock(), database_instance=None)
- expected_trait_info = {
- "description": "",
- "trait_display_name": "",
- "abbreviation": "",
- "chr": "",
- "mb": "",
- "locus": ""
- }
-
- self.assertEqual(results, expected_trait_info)