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authorFrederick Muriuki Muriithi2022-02-14 06:56:32 +0300
committerFrederick Muriuki Muriithi2022-02-17 06:37:30 +0300
commit74044f3c7985308b4996da3a52f91c5c20a19194 (patch)
treed86714b859b31cbbd1755522f8abd8eed16e321b /tests/unit/computations/test_gemma.py
parent67f517aa0f44f55dc691ffd791bf22ef7af0b02c (diff)
downloadgenenetwork3-74044f3c7985308b4996da3a52f91c5c20a19194.tar.gz
Use pytest's "mark" feature to categorise tests
Use pytest's `mark` feature to explicitly categorise the tests and run them per category
Diffstat (limited to 'tests/unit/computations/test_gemma.py')
-rw-r--r--tests/unit/computations/test_gemma.py8
1 files changed, 7 insertions, 1 deletions
diff --git a/tests/unit/computations/test_gemma.py b/tests/unit/computations/test_gemma.py
index 73dd5eb..b36a93e 100644
--- a/tests/unit/computations/test_gemma.py
+++ b/tests/unit/computations/test_gemma.py
@@ -1,7 +1,9 @@
"""Test cases for procedures defined in computations.gemma"""
import unittest
-
from unittest import mock
+
+import pytest
+
from gn3.computations.gemma import generate_gemma_cmd
from gn3.computations.gemma import generate_hash_of_string
from gn3.computations.gemma import generate_pheno_txt_file
@@ -9,6 +11,7 @@ from gn3.computations.gemma import generate_pheno_txt_file
class TestGemma(unittest.TestCase):
"""Test cases for computations.gemma module"""
+ @pytest.mark.unit_test
def test_generate_pheno_txt_file(self):
"""Test that the pheno text file is generated correctly"""
open_mock = mock.mock_open()
@@ -26,11 +29,13 @@ class TestGemma(unittest.TestCase):
mock.call("BXD07 438.700\n")
])
+ @pytest.mark.unit_test
def test_generate_hash_of_string(self):
"""Test that a string is hashed correctly"""
self.assertEqual(generate_hash_of_string("I^iQP&TlSR^z"),
"hMVRw8kbEp49rOmoIkhMjA")
+ @pytest.mark.unit_test
@mock.patch("gn3.computations.gemma.get_hash_of_files")
def test_compute_k_values_without_loco(self, mock_get_hash):
"""Test computing k values without loco"""
@@ -52,6 +57,7 @@ class TestGemma(unittest.TestCase):
"-gk > /tmp/my-token/my-hash-output.json")
})
+ @pytest.mark.unit_test
@mock.patch("gn3.computations.gemma.get_hash_of_files")
def test_generate_gemma_cmd_with_loco(self, mock_get_hash):
"""Test computing k values with loco"""