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authorFrederick Muriuki Muriithi2021-11-01 08:33:26 +0300
committerFrederick Muriuki Muriithi2021-11-01 08:33:26 +0300
commitb56341f9144623cc41bc815b337490ace04b2495 (patch)
treee568d94460585155d752bdf75fd7205699251bf2 /tests/unit/computations/test_biweight.py
parent37cf87e94a44ba2ab26a8e458e0c5a90fe5ecc7a (diff)
parent8f036415975d6e224e5e94277997329c0f1fa159 (diff)
downloadgenenetwork3-b56341f9144623cc41bc815b337490ace04b2495.tar.gz
Merge branch 'main' of github.com:genenetwork/genenetwork3 into partial-correlations
Diffstat (limited to 'tests/unit/computations/test_biweight.py')
-rw-r--r--tests/unit/computations/test_biweight.py21
1 files changed, 0 insertions, 21 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py
deleted file mode 100644
index ad404f1..0000000
--- a/tests/unit/computations/test_biweight.py
+++ /dev/null
@@ -1,21 +0,0 @@
-"""test for biweight script"""
-from unittest import TestCase
-from unittest import mock
-
-from gn3.computations.biweight import calculate_biweight_corr
-
-
-class TestBiweight(TestCase):
- """test class for biweight"""
-
- @mock.patch("gn3.computations.biweight.subprocess.check_output")
- def test_calculate_biweight_corr(self, mock_check_output):
- """test for calculate_biweight_corr func"""
- mock_check_output.return_value = "0.1 0.5"
- results = calculate_biweight_corr(command="Rscript",
- path_to_script="./r_script.R",
- trait_vals=[
- 1.2, 1.1, 1.9],
- target_vals=[1.9, 0.4, 1.1])
-
- self.assertEqual(results, (0.1, 0.5))