aboutsummaryrefslogtreecommitdiff
path: root/tests/unit/computations/test_biweight.py
diff options
context:
space:
mode:
authorzsloan2021-11-11 11:23:39 -0600
committerGitHub2021-11-11 11:23:39 -0600
commit8c77af63efae6f06d7c7c3269fc0e41811a8037a (patch)
tree9ffa4b84fd36f09e772db3e218bc980999324c41 /tests/unit/computations/test_biweight.py
parent607c6e627c23c1bce3b199b145855182ab51b211 (diff)
parent249b85102063debfeeb1b0565956059b8a3af1cf (diff)
downloadgenenetwork3-8c77af63efae6f06d7c7c3269fc0e41811a8037a.tar.gz
Merge branch 'main' into feature/add_rqtl_pairscan
Diffstat (limited to 'tests/unit/computations/test_biweight.py')
-rw-r--r--tests/unit/computations/test_biweight.py21
1 files changed, 0 insertions, 21 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py
deleted file mode 100644
index ad404f1..0000000
--- a/tests/unit/computations/test_biweight.py
+++ /dev/null
@@ -1,21 +0,0 @@
-"""test for biweight script"""
-from unittest import TestCase
-from unittest import mock
-
-from gn3.computations.biweight import calculate_biweight_corr
-
-
-class TestBiweight(TestCase):
- """test class for biweight"""
-
- @mock.patch("gn3.computations.biweight.subprocess.check_output")
- def test_calculate_biweight_corr(self, mock_check_output):
- """test for calculate_biweight_corr func"""
- mock_check_output.return_value = "0.1 0.5"
- results = calculate_biweight_corr(command="Rscript",
- path_to_script="./r_script.R",
- trait_vals=[
- 1.2, 1.1, 1.9],
- target_vals=[1.9, 0.4, 1.1])
-
- self.assertEqual(results, (0.1, 0.5))