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authorAlexander Kabui2021-03-30 18:12:58 +0300
committerAlexander Kabui2021-03-30 18:12:58 +0300
commite6f10522833cbd75441766e5b8656b3f5925d6d7 (patch)
tree99ad19a80f3a22307164c4d6e0450e527a060640 /tests/integration
parent5151987063eab58b10a2dd8e831ec036df217531 (diff)
downloadgenenetwork3-e6f10522833cbd75441766e5b8656b3f5925d6d7.tar.gz
initial commit for creating trait and datasets
Diffstat (limited to 'tests/integration')
-rw-r--r--tests/integration/test_traits.py70
1 files changed, 70 insertions, 0 deletions
diff --git a/tests/integration/test_traits.py b/tests/integration/test_traits.py
new file mode 100644
index 0000000..2f3433a
--- /dev/null
+++ b/tests/integration/test_traits.py
@@ -0,0 +1,70 @@
+"""module contains integration tests for trait endpoints"""
+from unittest import TestCase
+from unittest import mock
+
+from gn3.app import create_app
+
+
+class TraitIntegrationTest(TestCase):
+ """class contains integration tests for\
+ traits"""
+
+ def setUp(self):
+ self.app = create_app().test_client()
+
+ def test_home(self):
+ """test for initial endpoint for trait"""
+ results = self.app.get("/api/trait", follow_redirects=True)
+
+ self.assertEqual(200, results.status_code)
+
+ @mock.patch("gn3.api.traits.fetch_trait")
+ def test_create_trait(self, mock_fetch_trait):
+ """test the endpoint for creating traits\
+ endpoint requires trait name and dataset name"""
+
+ trait_results = {
+ "dataset": None,
+ "trait_name": "1449593_at",
+ "trait_data": {}
+
+ }
+ mock_fetch_trait.return_value = trait_results
+
+ results = self.app.get(
+ "/api/trait/1449593_at/HC_M2_0606_P", follow_redirects=True)
+
+ trait_data = results.get_json()
+
+ self.assertEqual(results.status_code, 200)
+ self.assertEqual(trait_data, trait_results)
+
+ @mock.patch("gn3.api.traits.get_trait_info_data")
+ def test_retrieve_trait_info(self, mock_get_trait_info):
+ """integration test for endpoints for retrieving\
+ trait info expects the dataset of trait to have been
+ created"""
+
+ trait_post_data = {
+ "trait": {"trait_name": ""},
+ "trait_dataset": {"dataset_name": ""}
+ }
+
+ expected_api_results = {
+ "description": "trait description",
+ "chr": "",
+ "locus": "",
+ "mb": "",
+ "abbreviation": "trait_abbreviation",
+ "trait_display_name": "trait_name"
+
+ }
+ mock_get_trait_info.return_value = expected_api_results
+
+ trait_info = self.app.post(
+ "/api/trait/trait_info/144_at", json=trait_post_data, follow_redirects=True)
+
+ trait_info_results = trait_info.get_json()
+
+ self.assertEqual(trait_info.status_code, 200)
+ self.assertEqual(trait_info_results, expected_api_results)