initial commit for creating trait and datasets

1 files changed, 70 insertions, 0 deletions

diff --git a/tests/integration/test_traits.py b/tests/integration/test_traits.py
new file mode 100644
index 0000000..2f3433a
--- /dev/null
+++ b/tests/integration/test_traits.py
@@ -0,0 +1,70 @@
+"""module contains integration tests for trait endpoints"""
+from unittest import TestCase
+from unittest import mock
+
+from gn3.app import create_app
+
+
+class TraitIntegrationTest(TestCase):
+    """class contains integration tests for\
+    traits"""
+
+    def setUp(self):
+        self.app = create_app().test_client()
+
+    def test_home(self):
+        """test for initial endpoint for trait"""
+        results = self.app.get("/api/trait", follow_redirects=True)
+
+        self.assertEqual(200, results.status_code)
+
+    @mock.patch("gn3.api.traits.fetch_trait")
+    def test_create_trait(self, mock_fetch_trait):
+        """test the endpoint for creating traits\
+        endpoint requires trait name and dataset name"""
+
+        trait_results = {
+            "dataset": None,
+            "trait_name": "1449593_at",
+            "trait_data": {}
+
+        }
+        mock_fetch_trait.return_value = trait_results
+
+        results = self.app.get(
+            "/api/trait/1449593_at/HC_M2_0606_P", follow_redirects=True)
+
+        trait_data = results.get_json()
+
+        self.assertEqual(results.status_code, 200)
+        self.assertEqual(trait_data, trait_results)
+
+    @mock.patch("gn3.api.traits.get_trait_info_data")
+    def test_retrieve_trait_info(self, mock_get_trait_info):
+        """integration test for endpoints for retrieving\
+        trait info expects the dataset of trait to have been
+        created"""
+
+        trait_post_data = {
+            "trait": {"trait_name": ""},
+            "trait_dataset": {"dataset_name": ""}
+        }
+
+        expected_api_results = {
+            "description": "trait description",
+            "chr": "",
+            "locus": "",
+            "mb": "",
+            "abbreviation": "trait_abbreviation",
+            "trait_display_name": "trait_name"
+
+        }
+        mock_get_trait_info.return_value = expected_api_results
+
+        trait_info = self.app.post(
+            "/api/trait/trait_info/144_at", json=trait_post_data, follow_redirects=True)
+
+        trait_info_results = trait_info.get_json()
+
+        self.assertEqual(trait_info.status_code, 200)
+        self.assertEqual(trait_info_results, expected_api_results)