diff options
| author | Arun Isaac | 2022-02-11 11:55:14 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-02-11 11:59:24 +0530 |
| commit | d0c7631276223aae6954f7643abac262aa080e50 (patch) | |
| tree | 34144f317def70a028feb753d7583d1e837b27b3 /sql/schema-original.sql | |
| parent | 5c5df8148fcaaed33a49a29cd303d739855ea251 (diff) | |
| download | genenetwork3-d0c7631276223aae6954f7643abac262aa080e50.tar.gz | |
sql: Remove database mapping code.
These tools have been greatly improved and moved to a new home at
https://git.genenetwork.org/arunisaac/dump-genenetwork-database
* sql/map-database.sh, sql/schema-from-in-db-documentation.org,
sql/schema-original.sql, sql/schema.png, sql/schema.sql, sql/schema.svg: New
files.
Diffstat (limited to 'sql/schema-original.sql')
| -rw-r--r-- | sql/schema-original.sql | 2334 |
1 files changed, 0 insertions, 2334 deletions
diff --git a/sql/schema-original.sql b/sql/schema-original.sql deleted file mode 100644 index 8803d8a..0000000 --- a/sql/schema-original.sql +++ /dev/null @@ -1,2334 +0,0 @@ --- MySQL dump 10.16 Distrib 10.1.41-MariaDB, for debian-linux-gnu (x86_64) --- --- Host: localhost Database: db_webqtl --- ------------------------------------------------------ --- Server version 10.5.8-MariaDB-log - -/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */; -/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */; -/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */; -/*!40101 SET NAMES utf8mb4 */; -/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */; -/*!40103 SET TIME_ZONE='+00:00' */; -/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */; -/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */; -/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */; -/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */; - --- --- Table structure for table `AccessLog` --- - -DROP TABLE IF EXISTS `AccessLog`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `AccessLog` ( - `id` int(10) unsigned NOT NULL AUTO_INCREMENT, - `accesstime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', - `ip_address` char(20) NOT NULL DEFAULT '0.0.0.0', - PRIMARY KEY (`id`) -) ENGINE=MyISAM AUTO_INCREMENT=1366832 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `AvgMethod` --- - -DROP TABLE IF EXISTS `AvgMethod`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `AvgMethod` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `AvgMethodId` int(5) DEFAULT NULL, - `Name` char(30) NOT NULL DEFAULT '', - `Normalization` varchar(30) DEFAULT NULL, - PRIMARY KEY (`Id`) -) ENGINE=MyISAM AUTO_INCREMENT=28 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `BXDSnpPosition` --- - -DROP TABLE IF EXISTS `BXDSnpPosition`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `BXDSnpPosition` ( - `id` int(11) NOT NULL AUTO_INCREMENT, - `Chr` char(2) DEFAULT NULL, - `StrainId1` int(11) DEFAULT NULL, - `StrainId2` int(11) DEFAULT NULL, - `Mb` double DEFAULT NULL, - `Mb_2016` double DEFAULT NULL, - PRIMARY KEY (`id`), - KEY `BXDSnpPosition` (`Chr`,`StrainId1`,`StrainId2`,`Mb`) -) ENGINE=MyISAM AUTO_INCREMENT=7791982 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `CaseAttribute` --- - -DROP TABLE IF EXISTS `CaseAttribute`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `CaseAttribute` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `Name` varchar(30) NOT NULL DEFAULT '', - PRIMARY KEY (`Id`) -) ENGINE=MyISAM AUTO_INCREMENT=34 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `CaseAttributeXRef` --- - -DROP TABLE IF EXISTS `CaseAttributeXRef`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `CaseAttributeXRef` ( - `ProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, - `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, - `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, - `Value` varchar(100) NOT NULL DEFAULT '', - PRIMARY KEY (`ProbeSetFreezeId`,`StrainId`,`CaseAttributeId`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `CaseAttributeXRefNew` --- - -DROP TABLE IF EXISTS `CaseAttributeXRefNew`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `CaseAttributeXRefNew` ( - `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, - `StrainId` int(8) unsigned NOT NULL DEFAULT 0, - `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, - `Value` varchar(100) NOT NULL DEFAULT '', - PRIMARY KEY (`InbredSetId`,`StrainId`,`CaseAttributeId`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `CeleraINFO_mm6` --- - -DROP TABLE IF EXISTS `CeleraINFO_mm6`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `CeleraINFO_mm6` ( - `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, - `SNPID` char(14) NOT NULL DEFAULT '', - `chromosome` char(3) DEFAULT NULL, - `MB_UCSC` double DEFAULT NULL, - `MB_celera` double DEFAULT NULL, - `allele_B6` char(4) DEFAULT NULL, - `allele_D2` char(4) DEFAULT NULL, - `allele_AJ` char(4) DEFAULT NULL, - `B6_D2` char(1) DEFAULT NULL, - `B6_AJ` char(1) DEFAULT NULL, - `D2_AJ` char(1) DEFAULT NULL, - `MB_UCSC_OLD` double DEFAULT NULL, - `allele_S1` char(4) DEFAULT NULL, - `allele_X1` char(4) DEFAULT NULL, - `flanking5` char(100) DEFAULT NULL, - `flanking3` char(100) DEFAULT NULL, - PRIMARY KEY (`Id`), - KEY `celeraIndex` (`chromosome`,`MB_celera`), - KEY `celeraIndex2` (`chromosome`,`MB_UCSC`), - KEY `chromosome_2` (`chromosome`,`MB_UCSC`), - KEY `MB_UCSC_2` (`MB_UCSC`,`chromosome`), - KEY `SNPID` (`SNPID`) -) ENGINE=MyISAM AUTO_INCREMENT=3028848 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `Chr_Length` --- - -DROP TABLE IF EXISTS `Chr_Length`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `Chr_Length` ( - `Name` char(3) NOT NULL DEFAULT '', - `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, - `OrderId` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `Length` int(10) unsigned NOT NULL DEFAULT 0, - `Length_2016` int(10) unsigned NOT NULL DEFAULT 0, - `Length_mm8` int(10) unsigned DEFAULT NULL, - UNIQUE KEY `nameIdx` (`SpeciesId`,`Name`), - UNIQUE KEY `SpeciesIdx` (`SpeciesId`,`OrderId`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `DBList` --- - -DROP TABLE IF EXISTS `DBList`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `DBList` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `DBTypeId` smallint(5) unsigned NOT NULL DEFAULT 0, - `FreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, - `Name` char(50) NOT NULL DEFAULT '', - `Code` char(50) DEFAULT NULL, - PRIMARY KEY (`Id`), - UNIQUE KEY `Cde` (`Code`), - KEY `DBIndex` (`DBTypeId`,`FreezeId`) -) ENGINE=MyISAM AUTO_INCREMENT=907 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `DBType` --- - -DROP TABLE IF EXISTS `DBType`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `DBType` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `Name` char(30) NOT NULL DEFAULT '', - PRIMARY KEY (`Id`) -) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `DatasetMapInvestigator` --- - -DROP TABLE IF EXISTS `DatasetMapInvestigator`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `DatasetMapInvestigator` ( - `Id` mediumint(9) NOT NULL AUTO_INCREMENT, - `DatasetId` int(6) NOT NULL, - `InvestigatorId` int(6) NOT NULL, - PRIMARY KEY (`Id`) -) ENGINE=MyISAM AUTO_INCREMENT=2403 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `DatasetStatus` --- - -DROP TABLE IF EXISTS `DatasetStatus`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `DatasetStatus` ( - `DatasetStatusId` int(5) NOT NULL, - `DatasetStatusName` varchar(20) DEFAULT NULL, - UNIQUE KEY `DatasetStatusId` (`DatasetStatusId`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `Dataset_mbat` --- - -DROP TABLE IF EXISTS `Dataset_mbat`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `Dataset_mbat` ( - `id` int(11) NOT NULL AUTO_INCREMENT, - `switch` int(1) DEFAULT NULL, - `species` varchar(255) DEFAULT NULL, - `cross` varchar(255) DEFAULT NULL, - `tissue` varchar(255) DEFAULT NULL, - `database` varchar(255) DEFAULT NULL, - `database_LongName` varchar(255) DEFAULT NULL, - PRIMARY KEY (`id`) -) ENGINE=MyISAM AUTO_INCREMENT=16 DEFAULT CHARSET=utf8; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `Datasets` --- - -DROP TABLE IF EXISTS `Datasets`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `Datasets` ( - `DatasetId` int(6) NOT NULL AUTO_INCREMENT, - `DatasetName` varchar(255) DEFAULT NULL, - `GeoSeries` varchar(30) DEFAULT NULL, - `PublicationTitle` longtext DEFAULT NULL, - `Summary` longtext DEFAULT NULL, - `ExperimentDesign` longtext DEFAULT NULL, - `AboutCases` longtext DEFAULT NULL, - `AboutTissue` longtext DEFAULT NULL, - `AboutPlatform` longtext DEFAULT NULL, - `AboutDataProcessing` longtext DEFAULT NULL, - `Contributors` longtext DEFAULT NULL, - `Citation` longtext DEFAULT NULL, - `Acknowledgment` longtext DEFAULT NULL, - `Notes` longtext DEFAULT NULL, - `InvestigatorId` int(5) NOT NULL, - `DatasetStatusId` int(5) NOT NULL, - PRIMARY KEY (`DatasetId`), - UNIQUE KEY `DatasetId` (`DatasetId`) -) ENGINE=MyISAM AUTO_INCREMENT=301 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `Docs` --- - -DROP TABLE IF EXISTS `Docs`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `Docs` ( - `id` int(11) NOT NULL AUTO_INCREMENT, - `entry` varchar(255) NOT NULL, - `title` varchar(255) NOT NULL, - `content` text NOT NULL, - PRIMARY KEY (`id`) -) ENGINE=MyISAM AUTO_INCREMENT=10 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `EnsemblChip` --- - -DROP TABLE IF EXISTS `EnsemblChip`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `EnsemblChip` ( - `Id` int(11) NOT NULL, - `ProbeSetSize` int(11) NOT NULL, - `Name` varchar(40) NOT NULL, - `Type` enum('AFFY','OLIGO') DEFAULT NULL -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `EnsemblProbe` --- - -DROP TABLE IF EXISTS `EnsemblProbe`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `EnsemblProbe` ( - `Id` int(11) NOT NULL, - `ChipId` int(11) NOT NULL, - `ProbeSet` varchar(40) DEFAULT NULL, - `Name` varchar(40) DEFAULT NULL, - `length` int(11) NOT NULL, - KEY `EnsemblProbeId` (`Id`), - KEY `EnsemblProbeName` (`Name`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `EnsemblProbeLocation` --- - -DROP TABLE IF EXISTS `EnsemblProbeLocation`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `EnsemblProbeLocation` ( - `Chr` char(2) NOT NULL, - `Start` int(11) NOT NULL, - `Start_2016` int(11) DEFAULT NULL, - `End` int(11) NOT NULL, - `End_2016` int(11) DEFAULT NULL, - `Strand` int(11) NOT NULL, - `MisMataches` int(11) DEFAULT NULL, - `ProbeId` int(11) NOT NULL, - KEY `EnsemblLocationProbeId` (`ProbeId`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GORef` --- - -DROP TABLE IF EXISTS `GORef`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GORef` ( - `id` int(11) NOT NULL AUTO_INCREMENT, - `goterm` varchar(255) DEFAULT NULL, - `genes` text DEFAULT NULL, - PRIMARY KEY (`id`) -) ENGINE=MyISAM AUTO_INCREMENT=17510 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `Genbank` --- - -DROP TABLE IF EXISTS `Genbank`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `Genbank` ( - `Id` varchar(20) NOT NULL DEFAULT '', - `Sequence` text DEFAULT NULL, - `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, - PRIMARY KEY (`Id`), - KEY `Id` (`Id`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneCategory` --- - -DROP TABLE IF EXISTS `GeneCategory`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneCategory` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `Name` char(255) NOT NULL DEFAULT '', - PRIMARY KEY (`Id`), - KEY `name_idx` (`Name`) -) ENGINE=MyISAM AUTO_INCREMENT=22 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneChip` --- - -DROP TABLE IF EXISTS `GeneChip`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneChip` ( - `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, - `GeneChipId` int(5) DEFAULT NULL, - `GeneChipName` varchar(200) DEFAULT NULL, - `Name` char(30) NOT NULL DEFAULT '', - `GeoPlatform` char(15) DEFAULT NULL, - `Title` varchar(100) DEFAULT NULL, - `SpeciesId` int(5) DEFAULT 1, - `GO_tree_value` varchar(50) DEFAULT NULL, - PRIMARY KEY (`Id`) -) ENGINE=MyISAM AUTO_INCREMENT=67 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneChipEnsemblXRef` --- - -DROP TABLE IF EXISTS `GeneChipEnsemblXRef`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneChipEnsemblXRef` ( - `GeneChipId` int(11) NOT NULL, - `EnsemblChipId` int(11) NOT NULL -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneIDXRef` --- - -DROP TABLE IF EXISTS `GeneIDXRef`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneIDXRef` ( - `mouse` int(11) NOT NULL DEFAULT 0, - `rat` int(11) NOT NULL DEFAULT 0, - `human` int(11) NOT NULL DEFAULT 0, - KEY `mouse_index` (`mouse`), - KEY `rat_index` (`rat`), - KEY `human_index` (`human`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneList` --- - -DROP TABLE IF EXISTS `GeneList`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneList` ( - `SpeciesId` int(5) unsigned NOT NULL DEFAULT 1, - `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, - `GeneSymbol` varchar(15) DEFAULT NULL, - `GeneDescription` text DEFAULT NULL, - `Chromosome` varchar(10) DEFAULT NULL, - `TxStart` double DEFAULT NULL, - `TxStart_2016` double DEFAULT NULL, - `TxEnd` double DEFAULT NULL, - `TxEnd_2016` double DEFAULT NULL, - `Strand` char(1) DEFAULT NULL, - `GeneID` varchar(10) DEFAULT NULL, - `NM_ID` varchar(15) DEFAULT NULL, - `kgID` varchar(10) DEFAULT NULL, - `GenBankID` varchar(15) DEFAULT NULL, - `UnigenID` varchar(15) DEFAULT NULL, - `ProteinID` varchar(15) DEFAULT NULL, - `AlignID` varchar(10) DEFAULT NULL, - `exonCount` int(7) NOT NULL DEFAULT 0, - `exonStarts` text DEFAULT NULL, - `exonEnds` text DEFAULT NULL, - `cdsStart` double DEFAULT NULL, - `cdsStart_2016` double DEFAULT NULL, - `cdsEnd` double DEFAULT NULL, - `cdsEnd_2016` double DEFAULT NULL, - `TxStart_mm8` double DEFAULT NULL, - `TxEnd_mm8` double DEFAULT NULL, - `Strand_mm8` char(1) DEFAULT NULL, - `exonCount_mm8` int(7) DEFAULT NULL, - `exonStarts_mm8` text DEFAULT NULL, - `exonEnds_mm8` text DEFAULT NULL, - `cdsStart_mm8` double DEFAULT NULL, - `cdsEnd_mm8` double DEFAULT NULL, - `Chromosome_mm8` varchar(10) DEFAULT NULL, - `Info_mm9` text DEFAULT NULL, - `RGD_ID` int(10) DEFAULT NULL, - UNIQUE KEY `geneId` (`SpeciesId`,`Id`), - KEY `geneSymbol` (`GeneSymbol`), - KEY `geneSymbol2` (`SpeciesId`,`GeneSymbol`), - KEY `Loc1` (`SpeciesId`,`Chromosome`,`TxStart`), - KEY `Loc2` (`SpeciesId`,`Chromosome`,`TxEnd`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneList_rn3` --- - -DROP TABLE IF EXISTS `GeneList_rn3`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneList_rn3` ( - `id` int(10) unsigned NOT NULL AUTO_INCREMENT, - `ProbeSet` varchar(16) DEFAULT NULL, - `geneSymbol` varchar(15) DEFAULT NULL, - `geneID` varchar(10) DEFAULT NULL, - `kgID` varchar(10) DEFAULT NULL, - `geneDescription` text DEFAULT NULL, - `genBankID` varchar(15) DEFAULT NULL, - `unigenID` varchar(15) DEFAULT NULL, - `score` int(4) DEFAULT NULL, - `qStart` int(3) DEFAULT NULL, - `qEnd` int(3) DEFAULT NULL, - `qSize` int(3) DEFAULT NULL, - `identity` varchar(7) DEFAULT NULL, - `chromosome` varchar(8) DEFAULT NULL, - `strand` char(1) DEFAULT NULL, - `txStart` double DEFAULT NULL, - `txEnd` double DEFAULT NULL, - `txSize` double DEFAULT NULL, - `span` int(7) DEFAULT NULL, - `specificity` double DEFAULT NULL, - `sequence` text DEFAULT NULL, - `flag` int(1) DEFAULT NULL, - PRIMARY KEY (`id`), - KEY `geneSymbol` (`geneSymbol`), - KEY `Loc1` (`chromosome`,`txStart`), - KEY `Loc2` (`chromosome`,`txEnd`) -) ENGINE=MyISAM AUTO_INCREMENT=14917 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; - --- --- Table structure for table `GeneList_rn33` --- - -DROP TABLE IF EXISTS `GeneList_rn33`; -/*!40101 SET @saved_cs_client = @@character_set_client */; -/*!40101 SET character_set_client = utf8 */; -CREATE TABLE `GeneList_rn33` ( - `id` int(10) unsigned NOT NULL AUTO_INCREMENT, - `geneSymbol` varchar(15) DEFAULT NULL, - `txStart` double DEFAULT NULL, - `txEnd` double DEFAULT NULL, - `exonCount` int(7) DEFAULT NULL, - `NM_ID` varchar(15) DEFAULT NULL, - `chromosome` varchar(8) DEFAULT NULL, - `strand` char(1) DEFAULT NULL, - `cdsStart` double DEFAULT NULL, - `cdsEnd` double DEFAULT NULL, - `exonStarts` text DEFAULT NULL, - `exonEnds` text DEFAULT NULL, - `kgID` varchar(10) DEFAULT NULL, - PRIMARY KEY (`id`), - KEY `geneSymbol` (`geneSymbol`), - KEY `Loc1` (`chromosome`,`txStart`), - KEY `Loc2` (`chromosome`,`txEnd`) -) ENGINE=MyISAM AUTO_INCREMENT=9790 DEFAULT CHARSET=latin1; -/*!40101 SET character_set_client = @saved_cs_client */; 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