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authorArun Isaac2022-06-17 14:07:26 +0530
committerArun Isaac2022-06-17 14:07:26 +0530
commitb480e1e4f98bfab66168811201eb541f965be554 (patch)
treefc7c03620cc23f61bd48db2249612c2ace6e830f /setup_commands
parentc2a6570a3dc2a9ae092b6a8273e7c6c0904dc1e1 (diff)
downloadgenenetwork3-b480e1e4f98bfab66168811201eb541f965be554.tar.gz
gn3: genodb: Read optimized storage for the current matrix.
The genotype database now stores the current version of the matrix alone in a read-optimized form, while storing the older versions of the matrix in a more compressed form. We are only interested in the current version of the matrix. So, always use the read optimized storage. * gn3/genodb.py (Matrix)[row_pointers, column_pointers]: Delete fields. [array, transpose]: New fields. * gn3/genodb.py (matrix, row, column): Read from read-optimized storage. (vector_ref): Delete function.
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