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| author | Arun Isaac | 2022-06-17 14:07:26 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-06-17 14:07:26 +0530 |
| commit | b480e1e4f98bfab66168811201eb541f965be554 (patch) | |
| tree | fc7c03620cc23f61bd48db2249612c2ace6e830f /setup_commands | |
| parent | c2a6570a3dc2a9ae092b6a8273e7c6c0904dc1e1 (diff) | |
| download | genenetwork3-b480e1e4f98bfab66168811201eb541f965be554.tar.gz | |
gn3: genodb: Read optimized storage for the current matrix.
The genotype database now stores the current version of the matrix alone in a
read-optimized form, while storing the older versions of the matrix in a more
compressed form. We are only interested in the current version of the
matrix. So, always use the read optimized storage.
* gn3/genodb.py (Matrix)[row_pointers, column_pointers]: Delete fields.
[array, transpose]: New fields.
* gn3/genodb.py (matrix, row, column): Read from read-optimized storage.
(vector_ref): Delete function.
Diffstat (limited to 'setup_commands')
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