diff options
| author | BonfaceKilz | 2021-06-21 12:41:20 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-06-22 10:59:39 +0300 |
| commit | 62c08981d76fa1e9d12407beb0202bdf054e7c7a (patch) | |
| tree | 889cf4fed5c8be3deae81014defecec8379827a5 /scripts | |
| parent | f949189dc727976a1574a57d3b0e895ff6598d07 (diff) | |
| download | genenetwork3-62c08981d76fa1e9d12407beb0202bdf054e7c7a.tar.gz | |
scripts: laminar: Add sh scripts for CI
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/laminar/gn3-lint.sh | 15 | ||||
| -rw-r--r-- | scripts/laminar/gn3-mypy.sh | 15 | ||||
| -rw-r--r-- | scripts/laminar/gn3-unittest.sh | 15 |
3 files changed, 45 insertions, 0 deletions
diff --git a/scripts/laminar/gn3-lint.sh b/scripts/laminar/gn3-lint.sh new file mode 100644 index 0000000..b6f0c89 --- /dev/null +++ b/scripts/laminar/gn3-lint.sh @@ -0,0 +1,15 @@ +#!/bin/sh + +set -e # Abort on first error +CUR_DIR=$PWD +GN3_CI_DIR=$HOME/CI/genenetwork3/ + +cd $GN3_CI_DIR +git pull + +# Run Pylint +env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \ + guix environment --load=guix.scm -- pylint sheepdog/worker.py gn3/ tests + +echo Done Running Pylint! +cd $CUR_DIR diff --git a/scripts/laminar/gn3-mypy.sh b/scripts/laminar/gn3-mypy.sh new file mode 100644 index 0000000..a2a9782 --- /dev/null +++ b/scripts/laminar/gn3-mypy.sh @@ -0,0 +1,15 @@ +#!/bin/sh + +set -e # Abort on first error +CUR_DIR=$PWD +GN3_CI_DIR=$HOME/CI/genenetwork3/ + +cd $GN3_CI_DIR +git pull + +# Run Pylint +env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \ + guix environment --load=guix.scm -- mypy . + +echo Done Running MyPy! +cd $CUR_DIR diff --git a/scripts/laminar/gn3-unittest.sh b/scripts/laminar/gn3-unittest.sh new file mode 100644 index 0000000..41dafe5 --- /dev/null +++ b/scripts/laminar/gn3-unittest.sh @@ -0,0 +1,15 @@ +#!/bin/sh + +set -e # Abort on first error +CUR_DIR=$PWD +GN3_CI_DIR=$HOME/CI/genenetwork3/ + +cd $GN3_CI_DIR +git pull + +# Run Pylint +env GUIX_PACKAGE_PATH="$HOME/guix-bioinformatics:$HOME/guix-past/modules" \ + guix environment --load=guix.scm -- python -m unittest discover + +echo Done Running Unittests! +cd $CUR_DIR |