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| author | zsloan | 2021-08-26 19:00:12 +0000 |
|---|---|---|
| committer | zsloan | 2021-08-26 19:00:12 +0000 |
| commit | 14d0a6649f6ecbb374a24f37efcd3a73982cf4c2 (patch) | |
| tree | ef691c10c7cfe8dfa0e620a3f096eabfd24edb42 /scripts | |
| parent | c9ee473ff7797f6bbd7507eb55c772a3a646acee (diff) | |
| download | genenetwork3-14d0a6649f6ecbb374a24f37efcd3a73982cf4c2.tar.gz | |
Added # permutations to verbose print
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/rqtl_wrapper.R | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/rqtl_wrapper.R b/scripts/rqtl_wrapper.R index f7e0406..f6788c5 100644 --- a/scripts/rqtl_wrapper.R +++ b/scripts/rqtl_wrapper.R @@ -195,18 +195,18 @@ if (opt$nperm > 0) { if (!is.null(opt$addcovar) || !is.null(opt$control)){ if (!is.null(opt$pstrata)) { - verbose_print('Running permutations with cofactors and strata\n') + verbose_print('Running ', opt$nperm, ' permutations with cofactors and strata\n') perm_results = scanone(cross_object, pheno.col=1, addcovar=covars, n.perm=opt$nperm, perm.strata=perm_strata, model=opt$model, method=opt$method) } else { - verbose_print('Running permutations with cofactors\n') + verbose_print('Running ', opt$nperm, ' permutations with cofactors\n') perm_results = scanone(cross_object, pheno.col=1, addcovar=covars, n.perm=opt$nperm, model=opt$model, method=opt$method) } } else { if (!is.null(opt$pstrata)) { - verbose_print('Running permutations with strata\n') + verbose_print('Running ', opt$nperm, ' permutations with strata\n') perm_results = scanone(cross_object, pheno.col=1, n.perm=opt$nperm, perm.strata=perm_strata, model=opt$model, method=opt$method) } else { - verbose_print('Running permutations\n') + verbose_print('Running ', opt$nperm, ' permutations\n') perm_results = scanone(cross_object, pheno.col=1, n.perm=opt$nperm, model=opt$model, method=opt$method) } } |