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authorAlexander Kabui2022-03-15 14:08:39 +0300
committerGitHub2022-03-15 14:08:39 +0300
commit16367dab9248d3aa2660e0b5cafdce25e8f7067c (patch)
tree1d08f861dbd7302ff43489fc338c99fa3cf92e6f /scripts/laminar/gn3-unittest.sh
parent4b85316c6ca5355faf6ac85f755744f8d52e49d3 (diff)
downloadgenenetwork3-16367dab9248d3aa2660e0b5cafdce25e8f7067c.tar.gz
Feature/refactored pca (#79)
* compute zscore function * test case for computing zscore * function to compute pca * generate scree plot data * generate new pca trait data from zscores and eigen_vec * remove redundant functions * generate factor loading table data * generate pca temp dataset dict * variable naming and error fixes * unit test for processing factor loadings * minor fixes for generating temp pca dataset * pass datetime as argument to generate_pca temp dataset function * add unittest for caching pca datasets * cache temp datasets * ignore missing imports for sklearn * mypy fixes * pylint fixes * refactor tests for pca * remove ununsed imports * fix for generating pca traits vals * mypy and code refactoring * pep8 formatting and add docstrings * remove comments /pep8 formatting * sort eigen vectors based on eigen values * minor fix for zscores * fix for rounding variance ratios * refactor tests * rename module to pca * rename datasets to traits * fix failing tests * fix caching function * fixes return x and y coordinates for scree plot * expand exception scope * fix for deprecated numpy.matrix function * fix for failing tests * pep8 fixes * remove comments * fix merge conflict * pylint fixes * rename module name to test_pca
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