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| author | Alexander Kabui | 2021-03-16 10:36:58 +0300 |
|---|---|---|
| committer | GitHub | 2021-03-16 10:36:58 +0300 |
| commit | 43d1bb7f6cd2b5890d5b3eb7c357caafda25a35c (patch) | |
| tree | 73683272f32cffc860497a93b5c844c272252e67 /requirements.txt | |
| parent | 995f1dbd081eb64ad177f929615a4edee01cb68f (diff) | |
| download | genenetwork3-43d1bb7f6cd2b5890d5b3eb7c357caafda25a35c.tar.gz | |
Refactor/clean up correlations (#4)
* initial commit for Refactor/clean-up-correlation
* add python scipy dependency
* initial commit for sample correlation
* initial commit for sample correlation endpoint
* initial commit for integration and unittest
* initial commit for registering correlation blueprint
* add and modify unittest and integration tests for correlation
* Add compute compute_all_sample_corr method for correlation
* add scipy to requirement txt file
* add tissue correlation for trait list
* add unittest for tissue correlation
* add lit correlation for trait list
* add unittests for lit correlation for trait list
* modify lit correlarion for trait list
* add unittests for lit correlation for trait list
* add correlation metho in dynamic url
* add file format for expected structure input while doing sample correlation
* modify input data structure -> add trait id
* update tests for sample r correlation
* add compute all lit correlation method
* add endpoint for computing lit_corr
* add unit and integration tests for computing lit corr
* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation
* add unittest and integration tests for tissue correlation
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
Diffstat (limited to 'requirements.txt')
| -rw-r--r-- | requirements.txt | 13 |
1 files changed, 10 insertions, 3 deletions
diff --git a/requirements.txt b/requirements.txt index e495e19..e4dc881 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,9 +4,16 @@ Flask==1.1.2 itsdangerous==1.1.0 Jinja2==2.11.3 MarkupSafe==1.1.1 -mysqlclient==2.0.1 +mccabe==0.6.1 +mypy==0.790 +mypy-extensions==0.4.3 numpy==1.20.1 +pycparser==2.20 +pylint==2.5.3 +redis==3.5.3 scipy==1.6.0 -SQLAlchemy==1.3.20 -sqlalchemy-stubs==0.4 +six==1.15.0 +toml==0.10.2 +typed-ast==1.4.2 +typing-extensions==3.7.4.3 Werkzeug==1.0.1 |