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authorFrederick Muriuki Muriithi2021-11-18 10:58:34 +0300
committerFrederick Muriuki Muriithi2021-11-18 10:58:34 +0300
commit21fbbfd599c841f082d88ddfc5f4cb362e1eb869 (patch)
tree11ba5b9b8758391c0df78745148f33d22c15bed0 /mypy.ini
parent29fc003070b45f61e7ab1048a818201b5beb9298 (diff)
downloadgenenetwork3-21fbbfd599c841f082d88ddfc5f4cb362e1eb869.tar.gz
Replace code migrated from R with pingouin functions
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Replace the code that was in the process of being migrated from R in GeneNetwork1 with calls to pingouin functions that achieve the same thing. Since the functions in this case are computing correlations and partial correlations, rather than having home-rolled functions to do that, this commit makes use of the tried and tested pingouin functions. This avoids complicating our code with edge-case checks, and leverages the performance optimisations done in pingouin.
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