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| author | Alexander Kabui | 2021-03-16 11:38:13 +0300 |
|---|---|---|
| committer | GitHub | 2021-03-16 11:38:13 +0300 |
| commit | 56ce88ad31dec3cece63e9370ca4e4c02139753b (patch) | |
| tree | 766504dfaca75a14cc91fc3d88c41d1e775d415f /guix.scm | |
| parent | 43d1bb7f6cd2b5890d5b3eb7c357caafda25a35c (diff) | |
| download | genenetwork3-56ce88ad31dec3cece63e9370ca4e4c02139753b.tar.gz | |
delete unwanted correlation stuff (#5)
* delete unwanted correlation stuff
* Refactor/clean up correlations (#4)
* initial commit for Refactor/clean-up-correlation
* add python scipy dependency
* initial commit for sample correlation
* initial commit for sample correlation endpoint
* initial commit for integration and unittest
* initial commit for registering correlation blueprint
* add and modify unittest and integration tests for correlation
* Add compute compute_all_sample_corr method for correlation
* add scipy to requirement txt file
* add tissue correlation for trait list
* add unittest for tissue correlation
* add lit correlation for trait list
* add unittests for lit correlation for trait list
* modify lit correlarion for trait list
* add unittests for lit correlation for trait list
* add correlation metho in dynamic url
* add file format for expected structure input while doing sample correlation
* modify input data structure -> add trait id
* update tests for sample r correlation
* add compute all lit correlation method
* add endpoint for computing lit_corr
* add unit and integration tests for computing lit corr
* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation
* add unittest and integration tests for tissue correlation
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
* update guix scm file
* fix pylint error for correlations api
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
Diffstat (limited to 'guix.scm')
| -rw-r--r-- | guix.scm | 10 |
1 files changed, 1 insertions, 9 deletions
@@ -72,19 +72,11 @@ ("python" ,python-wrapper) ("python-flask" ,python-flask) ("python-pylint" python-pylint) - ("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy) ("python-mypy" ,python-mypy) ("python-mypy-extensions" ,python-mypy-extensions) ("python-redis" ,python-redis) - ("python-scipy" ,python-scipy) - ;; Remove one of these! - ("python-sqlalchemy" ,python-sqlalchemy) - ("python-sqlalchemy-stubs" ,python-sqlalchemy-stubs) - ("python-mysqlclient" ,python-mysqlclient) - ;; This requires R in it's path - ;; TODO: Remove! - ("python-rpy2" ,python-rpy2))) + ("python-scipy" ,python-scipy))) (build-system python-build-system) (home-page "https://github.com/genenetwork/genenetwork3") (synopsis "GeneNetwork3 API for data science and machine learning.") |