diff options
| author | Arun Isaac | 2022-02-24 13:46:34 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-02-24 14:04:06 +0530 |
| commit | aaff8b8ac968bce9821d6fef22b1296247a9df09 (patch) | |
| tree | 87e7442b6f4114a64adeced052e3d3835b93a610 /guix-system.scm | |
| parent | 393700a432e25336c5afd1f008152202853f5bc2 (diff) | |
| download | genenetwork3-aaff8b8ac968bce9821d6fef22b1296247a9df09.tar.gz | |
gn3: Explicitly specify UTF-8 to be the file encoding.
When the encoding is not specified explicitly, the system default encoding is
used. This is not recommended.
* gn3/computations/ctl.py (call_ctl_script),
gn3/computations/gemma.py (generate_pheno_txt_file),
gn3/computations/parsers.py (parse_genofile),
gn3/computations/partial_correlations.py (partial_correlations_fast),
gn3/computations/rqtl.py (process_rqtl_output, process_perm_output),
gn3/computations/wgcna.py (dump_wgcna_data, call_wgcna_script),
gn3/fs_helpers.py (jsonfile_to_dict): Explicitly specify UTF-8 to be the file
encoding.
*
tests/unit/computations/test_gemma.py (TestGemma.test_generate_pheno_txt_file),
tests/unit/computations/test_wgcna.py (TestWgcna.test_create_json_file): Test
for call to open with encoding='utf-8' argument.
Diffstat (limited to 'guix-system.scm')
| -rw-r--r-- | guix-system.scm | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/guix-system.scm b/guix-system.scm index c154d01..7142cea 100644 --- a/guix-system.scm +++ b/guix-system.scm @@ -111,10 +111,11 @@ function." %base-file-systems)) (users %base-user-accounts) (packages %base-packages) - (services (cons* (service virtuoso-service-type - (virtuoso-configuration - (http-server-port 8891))) - (service genenetwork3-service-type - (genenetwork3-configuration - (port 5000))) - %base-services))) + (services (cons* + ;; (service virtuoso-service-type + ;; (virtuoso-configuration + ;; (http-server-port 8891))) + (service genenetwork3-service-type + (genenetwork3-configuration + (port 5000))) + %base-services))) |