aboutsummaryrefslogtreecommitdiff
path: root/gn3
diff options
context:
space:
mode:
authorAlexander Kabui2021-10-14 10:50:18 +0300
committerBonfaceKilz2022-01-22 09:23:14 +0300
commit64598509e7e4c3d06a2446c564f383d0d275c090 (patch)
tree0d012eac72ecd9255de83bf06c0eb7057ff85e45 /gn3
parent8da922d6835097c53d6d434cf6661027b15399a8 (diff)
downloadgenenetwork3-64598509e7e4c3d06a2446c564f383d0d275c090.tar.gz
init file to call ctl script
Diffstat (limited to 'gn3')
-rw-r--r--gn3/computations/ctl.py20
1 files changed, 20 insertions, 0 deletions
diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py
new file mode 100644
index 0000000..c4955a0
--- /dev/null
+++ b/gn3/computations/ctl.py
@@ -0,0 +1,20 @@
+"""module contains code to process ctl analysis data"""
+from gn3.commands import run_cmd
+
+from gn3.computations.wgcna import dump_wgcna_data
+from gn3.computations.wgcna import compose_wgcna_cmd
+
+
+def call_ctl_script(data):
+ """function to call ctl script"""
+
+ temp_file_name = dump_wgcna_data(data)
+ cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name)
+
+ try:
+ cmd_results = run_cmd(cmd)
+ print(cmd_results)
+ except Exception as e:
+ raise e
+
+ return "hello"