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| author | Alexander_Kabui | 2024-01-08 17:02:06 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2024-01-08 17:02:06 +0300 |
| commit | 44b44116f53919b809033b6318467c20aa80d1b7 (patch) | |
| tree | 5893518b6843574c0c87e1b8a0b2b1d4dfbf40c5 /gn3 | |
| parent | ffe6f24dc23c438413a5f1f9b4d269276eff19a7 (diff) | |
| download | genenetwork3-44b44116f53919b809033b6318467c20aa80d1b7.tar.gz | |
add json file for all references
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/llms/all_files.json | 11536 | ||||
| -rw-r--r-- | gn3/llms/client.py | 2 | ||||
| -rw-r--r-- | gn3/llms/response.py | 2 |
3 files changed, 11538 insertions, 2 deletions
diff --git a/gn3/llms/all_files.json b/gn3/llms/all_files.json new file mode 100644 index 0000000..3c3c1eb --- /dev/null +++ b/gn3/llms/all_files.json @@ -0,0 +1,11536 @@ +{ + "data": [ + { + "filename": "2019 - Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomics.pdf", + "id": "5d9d5e09-f80b-496a-b6b2-dfc7d7cf7f2b" + }, + { + "filename": "2015 - The 6 year incidence of diabetes-associated autoantibodies in genetically at-risk children the TEDDY study.pdf", + "id": "733e85a8-8ba1-4aae-8ce0-8597faaeefc7" + }, + { + "filename": "2003 - A functional polymorphism in the promoterenhancer region of the FOXP3Scurfin gene associated with type 1 diabetes.pdf", + "id": "7d331e2e-0bed-4d06-880f-f882c6d07214" + }, + { + "filename": "2018 - Genome-wide association studies of albuminuria towards genetic stratification in diabetes.pdf", + "id": "2ad3a7ba-8f21-4a1d-a92d-a3b3c9aa02e0" + }, + { + "filename": "2020 - Fine-tuning of Genome-Wide Polygenic 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Studies on genomic DNA topology and stability.pdf", + "id": "2b93a596-0842-40ae-86bb-36edf9a2d23d" + }, + { + "filename": "2003 - Population Screening in the Age.pdf", + "id": "50146ca4-1b2c-4585-b797-61dbe573ae70" + }, + { + "filename": "2003 - Welcome to the Genomic Era.pdf", + "id": "f7fe5d02-ee7c-4ec2-b6c4-ca9aa5efb41f" + }, + { + "filename": "1993 - Age distribution of latent herpes simplex virus 1 and varicella-zoster.pdf", + "id": "b3c92c3b-7cbf-41af-bc0a-2b969b7c29ef" + }, + { + "filename": "2016 - Age-related macular degeneration genome-wide association.pdf", + "id": "41c9da42-4f25-4f43-90f2-90cab36b35f3" + }, + { + "filename": "2015 - The Human Genome Project, and recent advances in personalized genomics.pdf", + "id": "448ebb84-7e31-4306-ba08-83c5f492a2ad" + }, + { + "filename": "2010 - Somatic evolutionary genomics Mutations during development cause highly variable genetic mosaicism with risk of cancer and neurodegeneration.pdf", + "id": "2d0d839d-e526-4fd0-8f20-7558f2eed389" + }, + { + "filename": "2002 - Roles of the Werner syndrome protein in pathways required.pdf", + "id": "b045a3ea-ed22-47d7-ae01-2e038f1f8fb0" + }, + { + "filename": "1996 - Livestock Genomics Comes of Age.pdf", + "id": "f8703b19-e43f-4a38-85c7-084d4ea23dee" + }, + { + "filename": "2008 - Estrogen, not intrinsic aging, is the major regulator of delayed.pdf", + "id": "0f75ea41-9d44-4374-ace4-8eab70be0960" + }, + { + "filename": "2017 - Genome-wide association analysis identifies novel.pdf", + "id": "8445153f-6286-49a3-b85f-791310383034" + } + ] +} diff --git a/gn3/llms/client.py b/gn3/llms/client.py index 4fc6aa0..4a43d2a 100644 --- a/gn3/llms/client.py +++ b/gn3/llms/client.py @@ -134,7 +134,7 @@ class GeneNetworkQAClient(Session): def custom_request(self, method, url, *args, **kwargs): max_retries = 5 - retry_delay = 4 + retry_delay = 10 response = super().request(method, url, *args, **kwargs) diff --git a/gn3/llms/response.py b/gn3/llms/response.py index 9172860..11cbd94 100644 --- a/gn3/llms/response.py +++ b/gn3/llms/response.py @@ -13,7 +13,7 @@ class DocIDs(): # open doc ids for GN refs self.doc_ids = self.loadFile("doc_ids.json") # open doc ids for Diabetes references - self.sugar_doc_ids = self.loadFile("sugar_doc_ids.json") + self.sugar_doc_ids = self.loadFile("all_files.json") # format is not what I prefer, it needs to be rebuilt self.formatDocIDs(self.sugar_doc_ids) |