New function (`slink`): return [] on exception

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi

* gn3/computations/slink.py: Add minimum code to pass new test
* tests/unit/computations/test_slink.py: new test

  Add test to ensure that the new `slink` function return an empty list in
  case and exception is raised.

  Add the new `slink` function with minimum amount of code needed to pass the
  test.

1 files changed, 12 insertions, 0 deletions

diff --git a/gn3/computations/slink.py b/gn3/computations/slink.py
index c29ddb0..103a853 100644
--- a/gn3/computations/slink.py
+++ b/gn3/computations/slink.py
@@ -6,6 +6,7 @@ FUNCTIONS:
 slink:
     TODO: Describe what the function does...
 """
+import logging
 from functools import partial
 
 class LengthError(BaseException):
@@ -116,3 +117,14 @@ def nearest(lists, i, j):
         return min(ns)
     else:
         raise ValueError("member values (i or j) should be lists/tuples of integers or integers")
+
+def slink(lists):
+    """
+    """
+    try:
+        nearest(lists, 1, 2)
+    except Exception as e:
+        # TODO: Look into making the logging log output to the system's
+        #    configured logger(s)
+        logging.warning("Exception: {}, {}".format(type(e), e))
+        return []