diff options
author | BonfaceKilz | 2021-02-12 15:35:43 +0300 |
---|---|---|
committer | BonfaceKilz | 2021-02-12 15:50:37 +0300 |
commit | ec5cb3e65df225cd589ea63effb0a26b4201c428 (patch) | |
tree | 6e44c8399270a57332b50dcb3fbd9039e85fddbe /gn3 | |
parent | 21a4a847456fde5fcc6072df0d0fc36992da283d (diff) | |
download | genenetwork3-ec5cb3e65df225cd589ea63effb0a26b4201c428.tar.gz |
Add new procedure for looking up files in a given ENV variable
* gn3/file_utils.py (lookup_file): New function.
* tests/unit/test_file_utils.py: New test cases for ^^.
Diffstat (limited to 'gn3')
-rw-r--r-- | gn3/file_utils.py | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gn3/file_utils.py b/gn3/file_utils.py index 8e342c9..36e3b6d 100644 --- a/gn3/file_utils.py +++ b/gn3/file_utils.py @@ -18,3 +18,19 @@ def get_dir_hash(directory: str) -> str: md5hash.update(bytearray(hashlib.md5(buf).hexdigest(), "utf-8")) return md5hash.hexdigest() + + +def lookup_file(environ_var: str, + root_dir: str, + file_name: str) -> str: + """Look up FILE_NAME in the path defined by ENVIRON_VAR/ROOT_DIR/; If +ENVIRON_VAR/ROOT_DIR/FILE_NAME does not exist, raise an exception. +Otherwise return ENVIRON_VAR/ROOT_DIR/FILE_NAME. + + """ + _dir = os.environ.get(environ_var) + if _dir: + _file = os.path.join(_dir, root_dir, file_name) + if os.path.isfile(_file): + return _file + raise FileNotFoundError |