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| author | BonfaceKilz | 2021-02-24 18:17:06 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-03-08 21:09:58 +0300 |
| commit | d266756d26e78e77b99515802de51ec1151a7abb (patch) | |
| tree | 50446df697585eae267741b475aee314cceca6e4 /gn3 | |
| parent | fde7e47975bcdc936b95f527a4880409ff54cf3e (diff) | |
| download | genenetwork3-d266756d26e78e77b99515802de51ec1151a7abb.tar.gz | |
Make the name of the redis job queue configurable
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/api/gemma.py | 1 | ||||
| -rw-r--r-- | gn3/commands.py | 5 | ||||
| -rw-r--r-- | gn3/settings.py | 3 |
3 files changed, 6 insertions, 3 deletions
diff --git a/gn3/api/gemma.py b/gn3/api/gemma.py index c145eb4..bdba26e 100644 --- a/gn3/api/gemma.py +++ b/gn3/api/gemma.py @@ -68,6 +68,7 @@ file output is returned. return jsonify( unique_id=queue_cmd(conn=redis.Redis(), email=data.get("email"), + job_queue=app_defaults.get("REDIS_JOB_QUEUE"), cmd=f"{k_computation_cmd} && {gwa_cmd}"), status="queued", output_file=(f"{data.get('dataset_name')}_GWA_" diff --git a/gn3/commands.py b/gn3/commands.py index 51c1582..70ef2cf 100644 --- a/gn3/commands.py +++ b/gn3/commands.py @@ -33,7 +33,8 @@ def compose_gemma_cmd( return cmd -def queue_cmd(conn: Redis, cmd: str, email: Optional[str] = None) -> str: +def queue_cmd(conn: Redis, job_queue: str, + cmd: str, email: Optional[str] = None) -> str: """Given a command CMD; (optional) EMAIL; and a redis connection CONN, queue it in Redis with an initial status of 'queued'. The following status codes are supported: @@ -53,7 +54,7 @@ are supported: "result": "", "status": "queued"}.items(): conn.hset(key, value, unique_id) - conn.rpush("GN2::job-queue", + conn.rpush(job_queue, unique_id) if email: conn.hset("email", diff --git a/gn3/settings.py b/gn3/settings.py index 6a67c0a..ddff766 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -8,5 +8,6 @@ APP_DEFAULTS = { "GEMMA_WRAPPER_CMD": os.environ.get("GEMMA_WRAPPER", "gemma-wrapper"), "TMPDIR": os.environ.get("TMPDIR", tempfile.gettempdir()), "GENODIR": "", - "REDIS_URI": "redis://localhost:6379/0" + "REDIS_URI": "redis://localhost:6379/0", + "REDIS_JOB_QUEUE": "GN3::job-queue" } |