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| author | Alexander Kabui | 2021-11-11 00:31:48 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-11-11 09:20:26 +0300 |
| commit | fa1af0daa093e80a2c235f0294d7fe61a5b65b4b (patch) | |
| tree | 122a75aab8f5ac803d266de95c9c2a4dc64e31fa /gn3 | |
| parent | e9fb78b5bc43bd8c63b8b790f0f3fe826051fbe7 (diff) | |
| download | genenetwork3-fa1af0daa093e80a2c235f0294d7fe61a5b65b4b.tar.gz | |
pylint fixes and pep8 formatting
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/computations/correlations.py | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 4987571..c5c56db 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -134,9 +134,9 @@ def fast_compute_all_sample_correlation(this_trait, for target_trait in target_dataset: trait_name = target_trait.get("trait_id") target_trait_data = target_trait["trait_sample_data"] - processed_values.append((trait_name, corr_method, *list(zip(*list(filter_shared_sample_keys( - this_trait_samples, target_trait_data)))) - )) + processed_values.append((trait_name, corr_method, + list(zip(*list(filter_shared_sample_keys( + this_trait_samples, target_trait_data)))))) with closing(multiprocessing.Pool()) as pool: results = pool.starmap(compute_sample_r_correlation, processed_values) @@ -170,8 +170,6 @@ def compute_all_sample_correlation(this_trait, target_trait_data = target_trait["trait_sample_data"] this_vals, target_vals = list(zip(*list(filter_shared_sample_keys( this_trait_samples, target_trait_data)))) - # this_vals, target_vals = filter_shared_sample_keys( - # this_trait_samples, target_trait_data) sample_correlation = compute_sample_r_correlation( trait_name=trait_name, |