delete unwanted correlation stuff (#5)

* delete unwanted correlation stuff

* Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

* update guix scm file

* fix pylint error for correlations api

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

1 files changed, 0 insertions, 37 deletions

diff --git a/gn3/utility/tools.py b/gn3/utility/tools.py
deleted file mode 100644
index 85df9f6..0000000
--- a/gn3/utility/tools.py
+++ /dev/null
@@ -1,37 +0,0 @@
-"""module contains general tools forgenenetwork"""
-
-import os
-
-from default_settings import GENENETWORK_FILES
-
-
-def valid_file(file_name):
-    """check if file is valid"""
-    if os.path.isfile(file_name):
-        return file_name
-    return None
-
-
-def valid_path(dir_name):
-    """check if path is valid"""
-    if os.path.isdir(dir_name):
-        return dir_name
-    return None
-
-
-def locate_ignore_error(name, subdir=None):
-    """
-    Locate a static flat file in the GENENETWORK_FILES environment.
-
-    This function does not throw an error when the file is not found
-    but returns None.
-    """
-    base = GENENETWORK_FILES
-    if subdir:
-        base = base+"/"+subdir
-    if valid_path(base):
-        lookfor = base + "/" + name
-        if valid_file(lookfor):
-            return lookfor
-
-    return None