delete unwanted correlation stuff (#5)

* delete unwanted correlation stuff

* Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

* update guix scm file

* fix pylint error for correlations api

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

1 files changed, 0 insertions, 50 deletions

diff --git a/gn3/utility/hmac.py b/gn3/utility/hmac.py
deleted file mode 100644
index eb39e59..0000000
--- a/gn3/utility/hmac.py
+++ /dev/null
@@ -1,50 +0,0 @@
-"""module for hmac """
-
-# pylint: disable-all
-import hmac
-import hashlib
-
-# xtodo work on this file
-
-# from main import app
-
-
-def hmac_creation(stringy):
-    """Helper function to create the actual hmac"""
-
-    # secret = app.config['SECRET_HMAC_CODE']
-    # put in config
-    secret = "my secret"
-    hmaced = hmac.new(bytearray(secret, "latin-1"),
-                      bytearray(stringy, "utf-8"),
-                      hashlib.sha1)
-    hm = hmaced.hexdigest()
-    # ZS: Leaving the below comment here to ask Pjotr about
-    # "Conventional wisdom is that you don't lose much in terms of security if you throw away up to half of the output."
-    # http://www.w3.org/QA/2009/07/hmac_truncation_in_xml_signatu.html
-    hm = hm[:20]
-    return hm
-
-
-def data_hmac(stringy):
-    """Takes arbitrary data string and appends :hmac so we know data hasn't been tampered with"""
-    return stringy + ":" + hmac_creation(stringy)
-
-
-def url_for_hmac(endpoint, **values):
-    """Like url_for but adds an hmac at the end to insure the url hasn't been tampered with"""
-
-    url = url_for(endpoint, **values)
-
-    hm = hmac_creation(url)
-    if '?' in url:
-        combiner = "&"
-    else:
-        combiner = "?"
-    return url + combiner + "hm=" + hm
-
-
-
-# todo
-# app.jinja_env.globals.update(url_for_hmac=url_for_hmac,
-#                              data_hmac=data_hmac)