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| author | Alexander Kabui | 2021-03-16 11:38:13 +0300 |
|---|---|---|
| committer | GitHub | 2021-03-16 11:38:13 +0300 |
| commit | 56ce88ad31dec3cece63e9370ca4e4c02139753b (patch) | |
| tree | 766504dfaca75a14cc91fc3d88c41d1e775d415f /gn3/utility/helper_functions.py | |
| parent | 43d1bb7f6cd2b5890d5b3eb7c357caafda25a35c (diff) | |
| download | genenetwork3-56ce88ad31dec3cece63e9370ca4e4c02139753b.tar.gz | |
delete unwanted correlation stuff (#5)
* delete unwanted correlation stuff
* Refactor/clean up correlations (#4)
* initial commit for Refactor/clean-up-correlation
* add python scipy dependency
* initial commit for sample correlation
* initial commit for sample correlation endpoint
* initial commit for integration and unittest
* initial commit for registering correlation blueprint
* add and modify unittest and integration tests for correlation
* Add compute compute_all_sample_corr method for correlation
* add scipy to requirement txt file
* add tissue correlation for trait list
* add unittest for tissue correlation
* add lit correlation for trait list
* add unittests for lit correlation for trait list
* modify lit correlarion for trait list
* add unittests for lit correlation for trait list
* add correlation metho in dynamic url
* add file format for expected structure input while doing sample correlation
* modify input data structure -> add trait id
* update tests for sample r correlation
* add compute all lit correlation method
* add endpoint for computing lit_corr
* add unit and integration tests for computing lit corr
* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation
* add unittest and integration tests for tissue correlation
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
* update guix scm file
* fix pylint error for correlations api
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
Diffstat (limited to 'gn3/utility/helper_functions.py')
| -rw-r--r-- | gn3/utility/helper_functions.py | 24 |
1 files changed, 0 insertions, 24 deletions
diff --git a/gn3/utility/helper_functions.py b/gn3/utility/helper_functions.py deleted file mode 100644 index f5a8b80..0000000 --- a/gn3/utility/helper_functions.py +++ /dev/null @@ -1,24 +0,0 @@ -"""module contains general helper functions """ -from gn3.base.data_set import create_dataset -from gn3.base.trait import create_trait -from gn3.base.species import TheSpecies - - -def get_species_dataset_trait(self, start_vars): - """function to get species dataset and trait""" - if "temp_trait" in list(start_vars.keys()): - if start_vars['temp_trait'] == "True": - self.dataset = create_dataset( - dataset_name="Temp", dataset_type="Temp", group_name=start_vars['group']) - - else: - self.dataset = create_dataset(start_vars['dataset']) - - else: - self.dataset = create_dataset(start_vars['dataset']) - self.species = TheSpecies(dataset=self.dataset) - - self.this_trait = create_trait(dataset=self.dataset, - name=start_vars['trait_id'], - cellid=None, - get_qtl_info=True) |