delete unwanted correlation stuff (#5)

* delete unwanted correlation stuff

* Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

* update guix scm file

* fix pylint error for correlations api

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

1 files changed, 0 insertions, 19 deletions

diff --git a/gn3/utility/db_tools.py b/gn3/utility/db_tools.py
deleted file mode 100644
index 446acda..0000000
--- a/gn3/utility/db_tools.py
+++ /dev/null
@@ -1,19 +0,0 @@
-"""module for db_tools"""
-from MySQLdb import escape_string as escape_
-
-
-def create_in_clause(items):
-    """Create an in clause for mysql"""
-    in_clause = ', '.join("'{}'".format(x) for x in mescape(*items))
-    in_clause = '( {} )'.format(in_clause)
-    return in_clause
-
-
-def mescape(*items):
-    """Multiple escape"""
-    return [escape_(str(item)).decode('utf8') for item in items]
-
-
-def escape(string_):
-    """escape function"""
-    return escape_(string_).decode('utf8')