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| author | Alexander | 2022-05-28 17:51:18 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-06-29 17:41:16 +0300 |
| commit | 195bf83a3165b7994e56f95ee3199a66dc086b78 (patch) | |
| tree | ccf630bbe174d3f17157aa05b145ba2735319dd3 /gn3/settings.py | |
| parent | 39631e78cf6594e6937a14c30c3a6cbd0bf3b816 (diff) | |
| download | genenetwork3-195bf83a3165b7994e56f95ee3199a66dc086b78.tar.gz | |
new variable: CORRELATION_COMMAND
Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index 6eec2a1..78ae7cb 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -29,6 +29,10 @@ WGCNA_RSCRIPT = "wgcna_analysis.R" # qtlreaper command REAPER_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/qtlreaper" +# correlation command + +CORRELATION_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/correlation_rust" + # genotype files GENOTYPE_FILES = os.environ.get( "GENOTYPE_FILES", f"{os.environ.get('HOME')}/genotype_files/genotype") |