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authorAlexander2022-05-28 17:51:18 +0300
committerBonfaceKilz2022-06-29 17:41:16 +0300
commit195bf83a3165b7994e56f95ee3199a66dc086b78 (patch)
treeccf630bbe174d3f17157aa05b145ba2735319dd3 /gn3/settings.py
parent39631e78cf6594e6937a14c30c3a6cbd0bf3b816 (diff)
downloadgenenetwork3-195bf83a3165b7994e56f95ee3199a66dc086b78.tar.gz
new variable: CORRELATION_COMMAND
Diffstat (limited to 'gn3/settings.py')
-rw-r--r--gn3/settings.py4
1 files changed, 4 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py
index 6eec2a1..78ae7cb 100644
--- a/gn3/settings.py
+++ b/gn3/settings.py
@@ -29,6 +29,10 @@ WGCNA_RSCRIPT = "wgcna_analysis.R"
# qtlreaper command
REAPER_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/qtlreaper"
+# correlation command
+
+CORRELATION_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/correlation_rust"
+
# genotype files
GENOTYPE_FILES = os.environ.get(
"GENOTYPE_FILES", f"{os.environ.get('HOME')}/genotype_files/genotype")