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| author | Arun Isaac | 2021-11-19 16:42:00 +0530 |
|---|---|---|
| committer | Arun Isaac | 2021-12-02 17:03:52 +0530 |
| commit | 0a29e362bd8627b9346e2260a14c81a46e2a76d3 (patch) | |
| tree | 5c5d061aec5fbef5a63a8ddbe95a9a59f72ded7f /gn3/settings.py | |
| parent | a1516993c7f6dc608f75ba42cb27b983e0c5c330 (diff) | |
| download | genenetwork3-0a29e362bd8627b9346e2260a14c81a46e2a76d3.tar.gz | |
Implement dataset metadata API endpoint.
* guix.scm: Import (gnu packages rdf).
(genenetwork3)[propagated-inputs]: Add python-sparqlwrapper.
* gn3/settings.py (SPARQL_ENDPOINT): New variable.
* gn3/api/general.py: Import datasets from gn3.db.
(dataset_metadata): New API endpoint.
* gn3/db/datasets.py: Import re, Template from string, Dict and Optional from
typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from
gn3.settings.
(sparql_query, dataset_metadata): New functions.
Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index 0ac6698..c945fbf 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -13,6 +13,9 @@ REDIS_JOB_QUEUE = "GN3::job-queue" TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir()) RQTL_WRAPPER = "rqtl_wrapper.R" +# SPARQL endpoint +SPARQL_ENDPOINT = "http://localhost:8891/sparql" + # SQL confs SQL_URI = os.environ.get( "SQL_URI", "mysql://webqtlout:webqtlout@localhost/db_webqtl") |