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author | Arun Isaac | 2022-10-18 16:25:36 +0530 |
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committer | Arun Isaac | 2022-10-18 16:26:43 +0530 |
commit | acc97e523ecdc6938b5744d4de4781e5d65f6d25 (patch) | |
tree | 9767b1e9fb0f6bdd495d37620384253d40adc21c /gn3/db_utils.py | |
parent | d7aa54361c1f7e6acb222f3ff65576d14eaff916 (diff) | |
download | genenetwork3-acc97e523ecdc6938b5744d4de4781e5d65f6d25.tar.gz |
Add database connection context manager.
* gn3/db_utils.py: Import contextlib. Import Any, Iterator, Protocol and Tuple
from typing.
(database_connector): Deprecate function.
(Connection): New class.
(database_connection): New function.
Diffstat (limited to 'gn3/db_utils.py')
-rw-r--r-- | gn3/db_utils.py | 24 |
1 files changed, 23 insertions, 1 deletions
diff --git a/gn3/db_utils.py b/gn3/db_utils.py index 4865131..69e88a5 100644 --- a/gn3/db_utils.py +++ b/gn3/db_utils.py @@ -1,5 +1,6 @@ """module contains all db related stuff""" -from typing import Tuple +import contextlib +from typing import Any, Iterator, Protocol, Tuple from urllib.parse import urlparse import MySQLdb as mdb from gn3.settings import SQL_URI @@ -15,8 +16,29 @@ def parse_db_url() -> Tuple: parsed_db.path[1:], parsed_db.port) +# This function is deprecated. Use database_connection instead. def database_connector() -> mdb.Connection: """function to create db connector""" host, user, passwd, db_name, db_port = parse_db_url() return mdb.connect(host, user, passwd, db_name, port=(db_port or 3306)) + + +class Connection(Protocol): + def cursor(self) -> Any: + ... + + +@contextlib.contextmanager +def database_connection() -> Iterator[Connection]: + """Connect to MySQL database.""" + host, user, passwd, db_name, port = parse_db_url() + connection = mdb.connect(db=db_name, + user=user, + passwd=passwd or '', + host=host, + port=port or 3306) + try: + yield connection + finally: + connection.close() |