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author | BonfaceKilz | 2021-06-07 11:16:25 +0300 |
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committer | BonfaceKilz | 2021-06-07 19:58:44 +0300 |
commit | ae77ad6f35999dd416590f2a9d9d6451880a4a70 (patch) | |
tree | 851e2210b2154def61b884239f45d597c7bb7b79 /gn3/db | |
parent | 3d4ed55b9e163938b11a5c62d2c5bbe938727f03 (diff) | |
download | genenetwork3-ae77ad6f35999dd416590f2a9d9d6451880a4a70.tar.gz |
gn3: db: Add "fetchall" method.
Diffstat (limited to 'gn3/db')
-rw-r--r-- | gn3/db/__init__.py | 20 |
1 files changed, 19 insertions, 1 deletions
diff --git a/gn3/db/__init__.py b/gn3/db/__init__.py index d311dea..25ecfd6 100644 --- a/gn3/db/__init__.py +++ b/gn3/db/__init__.py @@ -1,7 +1,7 @@ # pylint: disable=[R0902, R0903] """Module that exposes common db operations""" from dataclasses import asdict, astuple -from typing import Optional, Dict, Any +from typing import Any, Dict, Optional, Generator from typing_extensions import Protocol from gn3.db.metadata_audit import MetadataAudit @@ -77,6 +77,24 @@ def fetchone(conn: Any, return DATACLASSMAP[table](*cursor.fetchone()) +def fetchall(conn: Any, + table: str, + where: Optional[Dataclass]) -> Optional[Generator]: + """Run a SELECT on a table. Returns all the results as a tuple!""" + if not any(astuple(where)): + return None + where_ = {k: v for k, v in asdict(where).items() + if v is not None and k in TABLEMAP[table]} + sql = f"SELECT * FROM {table} " + if where: + sql += "WHERE " + sql += " AND ".join(f"{TABLEMAP[table].get(k)} = " + "%s" for k in where_.keys()) + with conn.cursor() as cursor: + cursor.execute(sql, tuple(where_.values())) + return (DATACLASSMAP[table](*record) for record in cursor.fetchall()) + + def insert(conn: Any, table: str, data: Dataclass) -> Optional[int]: |