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authorMuriithi Frederick Muriuki2021-08-04 11:30:44 +0300
committerMuriithi Frederick Muriuki2021-08-04 11:30:44 +0300
commitf712da630c1a3642cb44b62c4b2b857373cd78d7 (patch)
tree55417c63e2955522769f302c269411b7a2cd5afa /gn3/db
parent0d7ebb87e2995207f23bc8b8e05e64aaab50b48d (diff)
downloadgenenetwork3-f712da630c1a3642cb44b62c4b2b857373cd78d7.tar.gz
Fix issues caught by pylint
* gn3/computations/slink.py: remove unused imports * gn3/db/traits.py: remove unnecessary `else` clauses * tests/unit/db/test_traits.py: add docstrings for functions
Diffstat (limited to 'gn3/db')
-rw-r--r--gn3/db/traits.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index ea35d7e..29c91a6 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -166,8 +166,7 @@ def set_confidential_field(trait_info):
"confidential": 1 if (
trait_info.get("pre_publication_description", None)
and not trait_info.get("pubmed_id", None)) else 0}
- else:
- return trait_info
+ return trait_info
def retrieve_probeset_trait_info(trait_data_source: Dict[str, Any], conn: Any):
"""Retrieve trait information for type `ProbeSet` traits.
@@ -344,13 +343,14 @@ def set_riset_fields(trait_info, conn):
def retrieve_trait_info(
trait_type: str, trait_name: str, trait_dataset_id: int,
- trait_dataset_name: str, conn: Any, QTL=None):
+ trait_dataset_name: str, conn: Any, qtl=None):
"""Retrieves the trait information.
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlTrait.py#L397-L456
This function, or the dependent functions, might be incomplete as they are
currently."""
+ # pylint: disable=[R0913]
trait_info_function_table = {
"Publish": retrieve_publish_trait_info,
"ProbeSet": retrieve_probeset_trait_info,