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| author | Frederick Muriuki Muriithi | 2021-11-23 11:49:32 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-11-23 11:49:32 +0300 |
| commit | e1fb18b9d4a3b4ab9783f58d78ff384141567a42 (patch) | |
| tree | 5c0ae5ad800e5150fd313242cfb373dc83531a16 /gn3/db | |
| parent | 575da0baf4468d27782c73b19995b3adb934ba70 (diff) | |
| download | genenetwork3-e1fb18b9d4a3b4ab9783f58d78ff384141567a42.tar.gz | |
Update documentation for functions
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Document functions for posterity.
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/correlations.py | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index 7daff87..5c3e7b8 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -408,6 +408,10 @@ def build_query_sgo_lit_corr( """ Build query for `SGO Literature Correlation` data, when querying the given `temp_table` temporary table. + + This is a partial migration of the + `web.webqtl.correlation.CorrelationPage.fetchAllDatabaseData` function in + GeneNetwork1. """ return ( (f"SELECT {db_type}.Name, {temp_table}.value, " + @@ -424,6 +428,14 @@ def build_query_sgo_lit_corr( 2) def build_query_tissue_corr(db_type, temp_table, sample_id_columns, joins): + """ + Build query for `Tissue Correlation` data, when querying the given + `temp_table` temporary table. + + This is a partial migration of the + `web.webqtl.correlation.CorrelationPage.fetchAllDatabaseData` function in + GeneNetwork1. + """ return ( (f"SELECT {db_type}.Name, {temp_table}.Correlation, " + f"{temp_table}.PValue, " + |